Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_D17
         (873 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0922 - 28835983-28836129,28836328-28836474,28836782-288369...    41   0.001
04_04_0252 - 23935615-23936159,23936606-23936745,23936846-23937381     32   0.69 
08_02_0077 - 11979497-11979654,11980012-11982178                       31   1.6  
06_03_0157 + 17337641-17337896,17337975-17338082,17338643-173389...    28   8.5  
06_01_0506 + 3648546-3649256                                           28   8.5  
03_01_0027 - 250837-250877,250972-252909,253733-253805,254476-25...    28   8.5  

>03_05_0922 -
           28835983-28836129,28836328-28836474,28836782-28836910,
           28837201-28837278,28841639-28841812
          Length = 224

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
 Frame = +2

Query: 329 TILEQQRSYHEERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEAS-----IRL 493
           T+LE  R+ HE+ ER     V+E+  +    R+ +   HR++++ D  I  S     +R 
Sbjct: 4   TVLEATRAKHEDMERLERLAVRELQREPANARDRLYQSHRVRHMLDLVISTSGKLIIVRT 63

Query: 494 KELYEDKDGLRKEEISALSGPHEFQ 568
           KE  E K  L  EE+ A     E Q
Sbjct: 64  KENAEKKLTLTYEEMEAEREEEEVQ 88


>04_04_0252 - 23935615-23936159,23936606-23936745,23936846-23937381
          Length = 406

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 25/90 (27%), Positives = 46/90 (51%)
 Frame = +2

Query: 428 TINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFH 607
           T+  D   K LH ++   S +L EL  + DGLRKE   +L    E+++  + +KQ+++  
Sbjct: 141 TVEMDKVTKELH-KFSGDSKKLPELLTELDGLRKEH-QSLRSAFEYEK-NTNIKQVEQMR 197

Query: 608 RKHPNEISVPMSVEFEELANQRENPAEDSQ 697
               N ++  M+ E ++L     N  + +Q
Sbjct: 198 TMEMNLMT--MTKEADKLRADVANAEKRAQ 225


>08_02_0077 - 11979497-11979654,11980012-11982178
          Length = 774

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 407 KKTGHRETINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGP 556
           KK  H       H  +N H+RY E S+ +KE  +D   +  E+I     P
Sbjct: 286 KKQKHSAMEPVHHAEENRHERYTETSVHVKEAMKDLKLVFGEDIRCAQMP 335


>06_03_0157 +
           17337641-17337896,17337975-17338082,17338643-17338908,
           17339933-17340021,17340095-17340198,17340403-17340508,
           17340600-17340675,17340772-17340883,17341719-17342250,
           17343097-17343131,17343924-17343984,17344054-17344132,
           17344266-17344349
          Length = 635

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 21/106 (19%), Positives = 49/106 (46%)
 Frame = +2

Query: 284 KVIDIKQFL*PLKMETILEQQRSYHEERERTMDAMVKEILHKKTGHRETINADHRLKNLH 463
           KV +I++     +++ +L++  +   +RE+ +  ++KE    +  ++E +N    +  ++
Sbjct: 442 KVEEIREVAVDKQLQHVLQELANEKTDREKELAVLLKERTALEHQNQELMNLRSEIDGMY 501

Query: 464 DRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKE 601
           DR    S+   E+  ++  L K  +          E  S L+  KE
Sbjct: 502 DRLAMESL---EVMTEEQNLEKLSLDVNRKHQAVSESKSYLEAEKE 544


>06_01_0506 + 3648546-3649256
          Length = 236

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +2

Query: 557 HEFQEFYSRLKQIKEFHRKHPNEISVPMSVEFEELANQRENPAEDSQ 697
           HEF+E Y  + + ++ H++HP  +    + + E  A   E  AE+ +
Sbjct: 119 HEFRELYDSIPKRRKSHQQHP--LPSTAAADEEAAAADEEYEAEEEE 163


>03_01_0027 -
           250837-250877,250972-252909,253733-253805,254476-254555,
           255336-255595,255721-255785,256747-256839
          Length = 849

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +2

Query: 359 EERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKE-LYEDKDGLRKEE 535
           E++ +  D    ++  +   H +T    HR KNLH +  E  I+L E L     GL + E
Sbjct: 708 EQKRQEADNAHAQLQDECNRHTQTEADLHRFKNLHSQLEEEVIKLTENLDRSTKGLEELE 767

Query: 536 ISALSGPHEFQEFYSRL 586
            + L   +  +E  S +
Sbjct: 768 NAKLDLENTSRELKSTI 784


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,616,687
Number of Sequences: 37544
Number of extensions: 311114
Number of successful extensions: 820
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)