Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_D14
(908 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048 119 3e-27
06_03_0811 + 24830496-24831194 116 3e-26
02_01_0691 - 5167260-5167937 110 1e-24
01_01_1148 - 9113728-9113835,9113952-9114035,9114831-9114992,911... 107 2e-23
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 37 0.025
06_03_0012 + 15383628-15383823,15383915-15384100,15384326-15385518 32 0.55
01_06_0928 + 33085403-33089224 32 0.55
08_02_1402 - 26786011-26786128,26786263-26786516,26787505-267877... 31 0.96
11_03_0128 - 10437407-10438049,10438097-10438272 29 3.9
09_06_0228 + 21706118-21706252,21706327-21706406,21706742-217068... 29 3.9
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034 29 3.9
06_01_0861 + 6527279-6527582,6527619-6527719,6527817-6528042,652... 29 3.9
06_01_0671 - 4899611-4899829,4900870-4901448 29 3.9
11_06_0690 + 26303733-26306540 29 5.1
>01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048
Length = 162
Score = 119 bits (287), Expect = 3e-27
Identities = 59/123 (47%), Positives = 81/123 (65%), Gaps = 1/123 (0%)
Frame = +1
Query: 181 KVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVM 360
+V++ L AGKKVVLF VPGAFTP CS H+PG++ A++LK+ GV +I+ VSVNDP+VM
Sbjct: 26 QVSVHGLAAGKKVVLFGVPGAFTPTCSNQHVPGFINQAEQLKAKGVDDILLVSVNDPFVM 85
Query: 361 AAWGAQHNTKGKVRMLADPSGNFIKALDLGTNLPPLG-GFRSKRFSMVIVDSKVQDLNVE 537
AW + V+ LAD G + KAL L +L G G RS+RF+++ + KV N+E
Sbjct: 86 KAWAKSYPENKHVKFLADGLGTYTKALGLELDLSEKGLGIRSRRFALLADNLKVTVANIE 145
Query: 538 PDG 546
G
Sbjct: 146 EGG 148
>06_03_0811 + 24830496-24831194
Length = 232
Score = 116 bits (278), Expect = 3e-26
Identities = 59/142 (41%), Positives = 88/142 (61%), Gaps = 3/142 (2%)
Frame = +1
Query: 166 DSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVN 345
D V + +LTAGKKVVLFAVPGAFTP C++ H+PG+V A +L++ GV + CVSVN
Sbjct: 89 DGELKTVTVRDLTAGKKVVLFAVPGAFTPTCTQKHVPGFVAKAGELRAKGVDAVACVSVN 148
Query: 346 DPYVMAAWGAQHNTKGKVRMLADPSGNFIKALDLGTNL--PPLG-GFRSKRFSMVIVDSK 516
D +VM AW +V +L+D +G +A+ + +L P G G RS+R++++ D
Sbjct: 149 DAFVMRAWKESLGVGDEVLLLSDGNGELARAMGVELDLSDKPAGLGVRSRRYALLAEDGV 208
Query: 517 VQDLNVEPDGTGLSCSLADKIK 582
V+ LN+E G + S + +K
Sbjct: 209 VKVLNLEEGGAFTTSSAEEMLK 230
>02_01_0691 - 5167260-5167937
Length = 225
Score = 110 bits (265), Expect = 1e-24
Identities = 60/143 (41%), Positives = 86/143 (60%), Gaps = 4/143 (2%)
Frame = +1
Query: 166 DSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVN 345
D V + ELTAG+K VLFAVPGAFTP CS+ HLPG+++ A +L + GV I CVSVN
Sbjct: 81 DGELKTVTVAELTAGRKAVLFAVPGAFTPTCSQKHLPGFIEKAGELHAKGVDAIACVSVN 140
Query: 346 DPYVMAAWGAQHNT-KGKVRMLADPSGNFIKALDLGTNL--PPLG-GFRSKRFSMVIVDS 513
D +VM AW V +L+D + +AL + +L P+G G RS+R++++ D
Sbjct: 141 DAFVMRAWKESLGLGDADVLLLSDGNLELTRALGVEMDLSDKPMGLGVRSRRYALLADDG 200
Query: 514 KVQDLNVEPDGTGLSCSLADKIK 582
V+ LN+E G + S + +K
Sbjct: 201 VVKVLNLEEGGAFTTSSAEEMLK 223
>01_01_1148 -
9113728-9113835,9113952-9114035,9114831-9114992,
9115120-9115224,9115584-9116216,9117412-9117496,
9118426-9118520,9119083-9119241,9119968-9119997,
9120100-9120306
Length = 555
Score = 107 bits (256), Expect = 2e-23
Identities = 51/111 (45%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Frame = +1
Query: 208 GKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNT 387
GKKVV+F +PGA+T CS+ H+P Y N DKLK+ GV ++CVSVNDPY + W +
Sbjct: 70 GKKVVIFGLPGAYTGVCSQAHVPSYKNNIDKLKAKGVDSVICVSVNDPYALNGWAEKLQA 129
Query: 388 KGKVRMLADPSGNFIKALDLGTNL-PPLGGFRSKRFSMVIVDSKVQDLNVE 537
K + D G+F K+LDL +L L G RS R+S + D K++ NVE
Sbjct: 130 KDAIEFYGDFDGSFHKSLDLEVDLSAALLGRRSHRWSAFVDDGKIKAFNVE 180
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 36.7 bits (81), Expect = 0.025
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Frame = +1
Query: 166 DSPANKVNICELTAGKKVVLFAVPGAFTPGCSK--THLPGYVQNADKLKSDGVAEIVC-- 333
DS K+ I + V+LF+ PG FTP C+ + GY + DK + + I C
Sbjct: 51 DSTHGKIRIHDFVGDTYVILFSHPGDFTPVCTTELAAMAGYAKEFDK-RGVKLLGISCDD 109
Query: 334 VSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIKALDL 447
V + ++ + + ++ADPS IK L++
Sbjct: 110 VQSHKDWIKDIEAYKPGNRVTYPIMADPSREAIKQLNM 147
>06_03_0012 + 15383628-15383823,15383915-15384100,15384326-15385518
Length = 524
Score = 32.3 bits (70), Expect = 0.55
Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 9/105 (8%)
Frame = +1
Query: 142 CHAADLFEDSPANKVNICELTAG------KKVVLFAVP---GAFTPGCSKTHLPGYVQNA 294
C + E P + +CELT +K + F P GAF K P Y +
Sbjct: 138 CDENGVDEGFPYARPPVCELTGDIRISPKEKTMFFVNPSSAGAFDGNGEKKIRP-YARKD 196
Query: 295 DKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNF 429
D L GV E++ SV+ P + A HN V +A + NF
Sbjct: 197 DFLLP-GVVEVIIKSVSSPAIAPACTRTHNVPAVVFSVAGYTDNF 240
>01_06_0928 + 33085403-33089224
Length = 1273
Score = 32.3 bits (70), Expect = 0.55
Identities = 26/87 (29%), Positives = 39/87 (44%)
Frame = -1
Query: 566 REQDRPVPSGSTFRSWTLLSTMTIENLLERKPPSGGRLVPRSRALMKLPLGSASIRTFPL 387
+E+D + T +W + + K SG LVP S L +L L S SI L
Sbjct: 900 KERDEALVKEDTIEAWLCCHKERMRFIYSAK--SGLPLVPPS-GLCELYLSSCSITDGAL 956
Query: 386 VLC*APQAAITYGSLTDTHTISATPSD 306
LC ++ SLT+ T++ PS+
Sbjct: 957 ALCIGGLTSLRELSLTNIMTLTTLPSE 983
>08_02_1402 -
26786011-26786128,26786263-26786516,26787505-26787732,
26788920-26789759
Length = 479
Score = 31.5 bits (68), Expect = 0.96
Identities = 19/46 (41%), Positives = 22/46 (47%)
Frame = -2
Query: 571 RRENKTGQCHRAPHSDLGPCCQR*PSRTFWSGNLRAAADWCPGPEP 434
RRE +T H PHSDL P R P RT + + R P P P
Sbjct: 187 RREAETAHPHTQPHSDLSP---RTPRRTSAAASGRLQEKQAPPPLP 229
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 410 PIPAATSSRLWTWAPICRRSEVSAPKGSRWSSLTA 514
P P A+S L +W C RS +S+P S W TA
Sbjct: 233 PSPTASSESLGSWGSGC-RSHLSSPTCSSWWRTTA 266
>09_06_0228 +
21706118-21706252,21706327-21706406,21706742-21706866,
21706960-21707084,21707162-21707380,21707458-21707580,
21707661-21707761,21707847-21707899,21707972-21708174
Length = 387
Score = 29.5 bits (63), Expect = 3.9
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -3
Query: 552 ASAIGLHIQILDLAVNDDHREPFGAETSERRQIGAQVQSLDEVAAGIG*HTH 397
A +G + I+ AV D+ PFG ++S R +G SL G+ TH
Sbjct: 113 AGNLGNLLLIVVPAVCDEDGNPFGKDSSRCRSLGLSYSSLSMALGGLYIWTH 164
>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
Length = 930
Score = 29.5 bits (63), Expect = 3.9
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 463 PLGGFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKI 579
PL G S F+ +I S +Q +V+ DGT SC + D I
Sbjct: 456 PLEGVGSAYFNELINRSMIQPADVQYDGTVQSCRVHDMI 494
>06_01_0861 +
6527279-6527582,6527619-6527719,6527817-6528042,
6528132-6528475,6528624-6528989,6529080-6529347,
6529479-6529696
Length = 608
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 229 AVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAW-GAQHNT 387
A+ G P C H+ + K +S V V + YV+A W G+ H++
Sbjct: 140 ALDGTHIPACVPMHMQDRFRGRKKFQSQNVLAAVDFDLRFLYVLAGWEGSAHDS 193
>06_01_0671 - 4899611-4899829,4900870-4901448
Length = 265
Score = 29.5 bits (63), Expect = 3.9
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 208 GKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVND 348
G+ VV++ P TPGC+K + + +K K G AE++ +S +D
Sbjct: 144 GRPVVVYFYPADETPGCTK-QACAFRDSYEKFKKAG-AEVIGISGDD 188
>11_06_0690 + 26303733-26306540
Length = 935
Score = 29.1 bits (62), Expect = 5.1
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 6/116 (5%)
Frame = +1
Query: 130 RGSCCHAADLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKS 309
RG+ L SP V+ CE +A + AV GAFT + P +V A
Sbjct: 528 RGAAVGKESLLPSSPVAVVSQCEDSAPETQSTLAVVGAFTRPVFWSPQPVFVPAAKDSPP 587
Query: 310 DGVAEIVCVSVNDPYVMAAWGAQHNTKGKVR-----MLADPSGNF-IKALDLGTNL 459
+ A P + A G+QH + + + A SG+ ++++++G NL
Sbjct: 588 ESAA---ATEPPQPLLPATVGSQHESSPVLLPTSPVVAASASGSSPVQSVEVGPNL 640
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,153,349
Number of Sequences: 37544
Number of extensions: 550691
Number of successful extensions: 1324
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1323
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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