Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_D13
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...   163   3e-41
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    28   2.0  
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc...    27   3.5  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    27   3.5  
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    27   4.7  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    26   8.2  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    26   8.2  

>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score =  163 bits (396), Expect = 3e-41
 Identities = 82/181 (45%), Positives = 102/181 (56%), Gaps = 1/181 (0%)
 Frame = +2

Query: 245 LSKT-LLDRYRDLPLPEDKVLATYVWIDGSGEHVRCKDRTLNYIPETPKDLPIWNYXXXX 421
           LSK  +L++Y DLP    KV+A Y+WIDG   H+R K  TL+  P +   L +WN+    
Sbjct: 10  LSKAAILNKYADLP-QNGKVMAEYIWIDGFN-HLRSKTMTLDAKPSSIDQLRVWNFDGSS 67

Query: 422 XXXXXXXXXXXHLKPQAIYRDPFRRGNHVLVMCDTYDYSMQPTKTNHRIKCQEAYDRCXD 601
                       LKP A+Y DPFRRG+++LV+   Y     P   NHR  C +  ++  D
Sbjct: 68  TGQAPGNNSDTLLKPVAMYNDPFRRGDNILVLAACYTADGSPNGFNHRDACAKLLEKHAD 127

Query: 602 HEPWFGIEQEYVLLDSDLXPFGWPTTGSPXAQGPYYCGVGAXXVXARDXXEXHYKCXLXA 781
            E WFGIEQEY +LD    PFGWP  G P  QGP+YCGVG   V ARD  E HYK  L A
Sbjct: 128 KETWFGIEQEYTMLDYYDRPFGWPKGGFPGPQGPFYCGVGTGRVFARDIVEAHYKACLYA 187

Query: 782 G 784
           G
Sbjct: 188 G 188


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -1

Query: 230 SSLAPDPIKFLDCLALCFEFPTFF*HRLITFYCL 129
           S + P  ++++   +L  ++P FF H  +T +CL
Sbjct: 258 SGILPYFLQWMAVFSLYAKYPAFFEHHFLTIFCL 291


>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 161 KMSETQNKVQDNPKILSGPVL-KNSPNAFLSKTLLDRYRDLPLPEDK 298
           K  E ++++++  K + G  + +NS    LS  LLD+Y    +P+D+
Sbjct: 259 KAKEYEDRIRNAGKFVFGENMDRNSSGLLLSDELLDQYSISNIPKDE 305


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 203 ILSGPVLKNSPNAFLSKTLLD 265
           ++  P +KN PN F+SK L+D
Sbjct: 447 VILDPHIKNDPNYFVSKELID 467


>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 231 EFFSTGPDKIFGLSCTLF*VSDIFLAPLNHLLLFIIG 121
           ++FS G   +FG  CTL  +  +   P   LL +IIG
Sbjct: 170 DYFSAGAFVLFGSYCTLILMLRLDQLPGGKLLCWIIG 206


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +2

Query: 158 RKMSETQNKVQDNPKILSGPVLKNSPNAF--LSKTLLDRYRDLPLPEDKVLATYVWI 322
           RK+S  + K+ D     +  +LKNS +    L K+L++  R L   ED++  T +WI
Sbjct: 439 RKISSREIKMLD-----ARSMLKNSFDGSRDLQKSLIEHVRTLRRIEDEITLTKMWI 490


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 457 PEAPGHIQGPVPARKPRACHVRH 525
           P  P H+ GP+   +P+A  V H
Sbjct: 148 PLRPSHVSGPLSPPEPKAASVDH 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,020,560
Number of Sequences: 5004
Number of extensions: 59512
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)