Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_D13
(881 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 160 2e-39
02_05_0661 - 30693701-30693853,30694037-30694196,30694290-306943... 159 4e-39
03_02_0210 - 6425708-6425863,6425955-6426114,6426204-6426295,642... 130 1e-30
03_05_0899 - 28619081-28619208,28619309-28619369,28619936-286200... 127 1e-29
02_05_1131 - 34328168-34328557,34328838-34328957,34329067-343291... 29 4.9
11_01_0136 + 1135170-1135406,1135854-1136240 29 6.5
05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625 29 6.5
07_03_0523 + 19030078-19031109 28 8.6
>04_04_1445 - 33658355-33658417,33658536-33658669,33659056-33659116,
33659197-33659356,33660032-33660081,33662237-33662290,
33662630-33662704,33662821-33662949,33663065-33663152,
33663266-33663372,33663513-33663561,33663657-33663760,
33663941-33663980,33664409-33664659,33664674-33664686,
33665846-33666355,33666437-33667657,33667973-33668221,
33668305-33668531
Length = 1194
Score = 160 bits (388), Expect = 2e-39
Identities = 74/167 (44%), Positives = 96/167 (57%), Gaps = 3/167 (1%)
Frame = +2
Query: 293 DKVLATYVWIDGSGEHVRCKDRTLNYIPETPKDLPIWNYXXXXXXXXXXXXXXXHLKPQA 472
DK++A Y+W+ G+G +R K RT++ E P +LP WNY L PQA
Sbjct: 816 DKIIAEYIWVGGTGIDLRSKSRTISKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQA 875
Query: 473 IYRDPFRRGNHVLVMCDTYDYSMQPTKTNHRIKCQEAYD--RCXDHEPWFGIEQEYVLLD 646
I++DPFR GN++LVMCDTY + +P TN R + + + + PWFGIEQEY LL
Sbjct: 876 IFKDPFRGGNNILVMCDTYTPAGEPIPTNKRNRAAQVFSDPKVVSQVPWFGIEQEYTLLQ 935
Query: 647 SDLX-PFGWPTTGSPXAQGPYYCGVGAXXVXARDXXEXHYKCXLXAG 784
D+ P GWP G P QGPYYC VG+ RD + HYK L AG
Sbjct: 936 RDVNWPLGWPVGGYPGPQGPYYCAVGSDKSFGRDISDAHYKACLYAG 982
>02_05_0661 -
30693701-30693853,30694037-30694196,30694290-30694381,
30694469-30694543,30694671-30694799,30694916-30695003,
30695118-30695224,30695645-30695693,30695802-30695905,
30696108-30696147,30696838-30696911
Length = 356
Score = 159 bits (385), Expect = 4e-39
Identities = 75/167 (44%), Positives = 94/167 (56%), Gaps = 3/167 (1%)
Frame = +2
Query: 293 DKVLATYVWIDGSGEHVRCKDRTLNYIPETPKDLPIWNYXXXXXXXXXXXXXXXHLKPQA 472
+K++A Y+WI GSG +R K RTL+ P LP WNY L PQA
Sbjct: 17 EKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQA 76
Query: 473 IYRDPFRRGNHVLVMCDTYDYSMQPTKTNHRIKCQEAYD--RCXDHEPWFGIEQEYVLLD 646
I++DPFR+GN++LVMCD Y + +P TN R + + EPW+GIEQEY LL
Sbjct: 77 IFKDPFRKGNNILVMCDCYTPAGEPIPTNKRHNAAKIFSSPEVASEEPWYGIEQEYTLLQ 136
Query: 647 SDLX-PFGWPTTGSPXAQGPYYCGVGAXXVXARDXXEXHYKCXLXAG 784
D+ P GWP G P QGPYYCG+GA RD + HYK L AG
Sbjct: 137 KDINWPLGWPVGGFPGPQGPYYCGIGADKSFGRDIVDSHYKACLYAG 183
>03_02_0210 -
6425708-6425863,6425955-6426114,6426204-6426295,
6426490-6426564,6426701-6426829,6427312-6427375,
6427761-6427867,6428795-6428843,6428955-6429058,
6429166-6429205,6429492-6429565
Length = 349
Score = 130 bits (315), Expect = 1e-30
Identities = 67/167 (40%), Positives = 85/167 (50%), Gaps = 3/167 (1%)
Frame = +2
Query: 293 DKVLATYVWIDGSGEHVRCKDRTLNYIPETPKDLPIWNYXXXXXXXXXXXXXXXHLKPQA 472
DK++A Y+W+ GSG +R K RT+ LP WNY L PQA
Sbjct: 17 DKIIAEYIWVGGSGIDLRSKARTVKGPITDVSQLPKWNYDGSSTGQAPGEDSEVILYPQA 76
Query: 473 IYRDPFRRGNHVLVMCDTYDYSMQPTKTNHRIKCQEAYDR--CXDHEPWFGIEQEYVLLD 646
I++DPFRRG+++LVMCD Y +P TN R + + PW+GIEQEY LL
Sbjct: 77 IFKDPFRRGDNILVMCDCYTPQGEPIPTNKRHSAAKIFSHPDVVAEVPWYGIEQEYTLLQ 136
Query: 647 SDL-XPFGWPTTGSPXAQGPYYCGVGAXXVXARDXXEXHYKCXLXAG 784
D+ P GWP GPYYC GA RD + HYK + AG
Sbjct: 137 KDVNWPLGWP--------GPYYCAAGAEKAFGRDIVDAHYKACIYAG 175
>03_05_0899 -
28619081-28619208,28619309-28619369,28619936-28620095,
28620200-28620237,28620341-28620394,28620562-28620636,
28620744-28620872,28621172-28621259,28621340-28621446,
28621547-28621595,28621683-28621786,28622019-28622133,
28622517-28622596
Length = 395
Score = 127 bits (306), Expect = 1e-29
Identities = 62/152 (40%), Positives = 79/152 (51%), Gaps = 3/152 (1%)
Frame = +2
Query: 338 HVRCKDRTLNYIPETPKDLPIWNYXXXXXXXXXXXXXXXHLKPQAIYRDPFRRGNHVLVM 517
H++ + TL+ + P LP WN+ L PQAI+RDPFR+G ++LVM
Sbjct: 59 HLKEVNHTLSGPVDDPSKLPKWNFDGSSTGQATGDDSEVILHPQAIFRDPFRKGKNILVM 118
Query: 518 CDTYDYSMQPTKTNHRIKCQEAYDR--CXDHEPWFGIEQEYVLLDSDLX-PFGWPTTGSP 688
CD Y + +P TN+R + EPW+GIEQEY LL + P GWP G P
Sbjct: 119 CDCYAPNGEPIPTNNRYNAARIFSHPDVKAEEPWYGIEQEYTLLQKHINWPLGWPLGGYP 178
Query: 689 XAQGPYYCGVGAXXVXARDXXEXHYKCXLXAG 784
QGPYYC GA RD + HYK L AG
Sbjct: 179 GPQGPYYCAAGADKSYGRDIVDAHYKACLFAG 210
>02_05_1131 -
34328168-34328557,34328838-34328957,34329067-34329185,
34329659-34329767,34329847-34329885,34341125-34341203,
34341483-34341547,34341850-34341905,34342141-34342233,
34342312-34342579
Length = 445
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +2
Query: 608 PWFGIEQEYVLLDSDLXPFGWPTTGSPXAQGPYYCGVGAXXVXARDXXE 754
P FG+E + L S + G GSP A CGVG + D E
Sbjct: 84 PQFGLEGQRKLSQSSILVVGAGGLGSPVAMYLAACGVGCLGIVDGDRVE 132
>11_01_0136 + 1135170-1135406,1135854-1136240
Length = 207
Score = 28.7 bits (61), Expect = 6.5
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Frame = +1
Query: 208 IGSGAK--ELSKCIPLEDTVGPVQRSTAAGRQGPRHIRMDRRLRRACSLQRQDFELHSRD 381
I S A+ + +K IP+ + P + GR+ R + M L+R CS + E +
Sbjct: 82 IASSARVHQFTKSIPIPNKATPSEEEELKGREEDRCVAMTNELKR-CSKEATPSEEKAAK 140
Query: 382 S*RPADMELRRQLYRPDDKHELRHAPEAP 468
+ + ++++ H L P AP
Sbjct: 141 KMKKEEAVKKKRMPMERVHHLLSMVPRAP 169
>05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625
Length = 768
Score = 28.7 bits (61), Expect = 6.5
Identities = 23/83 (27%), Positives = 37/83 (44%)
Frame = +1
Query: 292 RQGPRHIRMDRRLRRACSLQRQDFELHSRDS*RPADMELRRQLYRPDDKHELRHAPEAPG 471
R P H R LR A +L+R + +++ + +++R L H + P++ G
Sbjct: 71 RANPTHHRR-LLLRSANTLERNTLKKKPKEA-VTTEEKVKRDLSHT--VHGVHPPPQSAG 126
Query: 472 HIQGPVPARKPRACHVRHIRLQH 540
+ AR PR H H RL H
Sbjct: 127 DLSA---ARNPRGAHFNHRRLHH 146
>07_03_0523 + 19030078-19031109
Length = 343
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 448 RHAPEAPGHIQGPVPARKPRACHVRH 525
R + G +QGPVPAR+P A ++H
Sbjct: 297 RQRVDHQGRVQGPVPARRP-ALRLKH 321
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,568,785
Number of Sequences: 37544
Number of extensions: 415725
Number of successful extensions: 1065
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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