Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_D13
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110479-26|CAB54376.1|  385|Caenorhabditis elegans Hypothetical...   195   3e-50
AL110479-25|CAB60321.1|  388|Caenorhabditis elegans Hypothetical...   195   3e-50
Z82259-3|CAB05127.1|  368|Caenorhabditis elegans Hypothetical pr...   190   1e-48
Z80223-3|CAB02317.1|  369|Caenorhabditis elegans Hypothetical pr...   186   2e-47
Z29560-1|CAA82655.1|  367|Caenorhabditis elegans Hypothetical pr...   179   2e-45
AC006618-2|AAK68249.1|  340|Caenorhabditis elegans Glutamine syn...   162   3e-40
Z81062-13|CAB82210.1|  333|Caenorhabditis elegans Hypothetical p...    29   5.8  

>AL110479-26|CAB54376.1|  385|Caenorhabditis elegans Hypothetical
           protein Y105C5B.28b protein.
          Length = 385

 Score =  195 bits (476), Expect = 3e-50
 Identities = 84/160 (52%), Positives = 103/160 (64%)
 Frame = +2

Query: 305 ATYVWIDGSGEHVRCKDRTLNYIPETPKDLPIWNYXXXXXXXXXXXXXXXHLKPQAIYRD 484
           A Y+WIDGSGE++R K RT ++ P  P+ LPIWN+               +LKP AIY D
Sbjct: 30  ALYIWIDGSGENIRAKTRTFDFEPTDPEKLPIWNFDGSSTGQAEGADSDVYLKPVAIYPD 89

Query: 485 PFRRGNHVLVMCDTYDYSMQPTKTNHRIKCQEAYDRCXDHEPWFGIEQEYVLLDSDLXPF 664
           PFR+G + LVMC+TYD   +PT TN+R +C+E  ++  D  PWFG+EQEY LLD D  PF
Sbjct: 90  PFRQGKNKLVMCETYDNKKKPTATNYRQRCKEVMEKAADQHPWFGMEQEYTLLDIDGHPF 149

Query: 665 GWPTTGSPXAQGPYYCGVGAXXVXARDXXEXHYKCXLXAG 784
           GWP  G P  QGPYYCGVGA  V  RD  E HY+  L AG
Sbjct: 150 GWPKNGFPGPQGPYYCGVGANKVYGRDIVEAHYRACLYAG 189


>AL110479-25|CAB60321.1|  388|Caenorhabditis elegans Hypothetical
           protein Y105C5B.28a protein.
          Length = 388

 Score =  195 bits (476), Expect = 3e-50
 Identities = 84/160 (52%), Positives = 103/160 (64%)
 Frame = +2

Query: 305 ATYVWIDGSGEHVRCKDRTLNYIPETPKDLPIWNYXXXXXXXXXXXXXXXHLKPQAIYRD 484
           A Y+WIDGSGE++R K RT ++ P  P+ LPIWN+               +LKP AIY D
Sbjct: 33  ALYIWIDGSGENIRAKTRTFDFEPTDPEKLPIWNFDGSSTGQAEGADSDVYLKPVAIYPD 92

Query: 485 PFRRGNHVLVMCDTYDYSMQPTKTNHRIKCQEAYDRCXDHEPWFGIEQEYVLLDSDLXPF 664
           PFR+G + LVMC+TYD   +PT TN+R +C+E  ++  D  PWFG+EQEY LLD D  PF
Sbjct: 93  PFRQGKNKLVMCETYDNKKKPTATNYRQRCKEVMEKAADQHPWFGMEQEYTLLDIDGHPF 152

Query: 665 GWPTTGSPXAQGPYYCGVGAXXVXARDXXEXHYKCXLXAG 784
           GWP  G P  QGPYYCGVGA  V  RD  E HY+  L AG
Sbjct: 153 GWPKNGFPGPQGPYYCGVGANKVYGRDIVEAHYRACLYAG 192


>Z82259-3|CAB05127.1|  368|Caenorhabditis elegans Hypothetical
           protein C28D4.3 protein.
          Length = 368

 Score =  190 bits (463), Expect = 1e-48
 Identities = 83/180 (46%), Positives = 107/180 (59%)
 Frame = +2

Query: 245 LSKTLLDRYRDLPLPEDKVLATYVWIDGSGEHVRCKDRTLNYIPETPKDLPIWNYXXXXX 424
           L +  +D +  LP    K  ATYVWIDG+GEH+R K RT+N  P+   + PIWNY     
Sbjct: 12  LGQATIDHFMGLPAHPTKCQATYVWIDGTGEHLRAKTRTINTKPQYLSEYPIWNYDGSST 71

Query: 425 XXXXXXXXXXHLKPQAIYRDPFRRGNHVLVMCDTYDYSMQPTKTNHRIKCQEAYDRCXDH 604
                     +L+P A++ DPF  G +VLVMCDT D+ M+PT TNHR  C E   +  D 
Sbjct: 72  GQADGLNSDRYLRPVAVFPDPFLGGLNVLVMCDTLDHEMKPTATNHRQMCAELMKKVSDQ 131

Query: 605 EPWFGIEQEYVLLDSDLXPFGWPTTGSPXAQGPYYCGVGAXXVXARDXXEXHYKCXLXAG 784
           +PWFG+EQEY+++D D  P GWP  G P  QG YYCG+GA     R+  E HY+  L AG
Sbjct: 132 QPWFGMEQEYLIVDRDEHPLGWPKHGYPAPQGKYYCGIGADRAFGREVVETHYRACLHAG 191


>Z80223-3|CAB02317.1|  369|Caenorhabditis elegans Hypothetical
           protein F26D10.10 protein.
          Length = 369

 Score =  186 bits (453), Expect = 2e-47
 Identities = 81/180 (45%), Positives = 106/180 (58%)
 Frame = +2

Query: 245 LSKTLLDRYRDLPLPEDKVLATYVWIDGSGEHVRCKDRTLNYIPETPKDLPIWNYXXXXX 424
           L +  +D +  LP    K  ATYVWIDG+GE +R K RT N  P+   + PIWNY     
Sbjct: 12  LGQATIDHFMGLPAHPSKCQATYVWIDGTGEQLRAKTRTFNLKPQYLSEYPIWNYDGSST 71

Query: 425 XXXXXXXXXXHLKPQAIYRDPFRRGNHVLVMCDTYDYSMQPTKTNHRIKCQEAYDRCXDH 604
                     +L+P A++ DPF +G++VLVMC+T D +M+PT TNHR  C     +  +H
Sbjct: 72  GQAEGLNSDRYLRPVAVFPDPFLQGHNVLVMCETLDETMKPTATNHRQNCAAIMKKVAEH 131

Query: 605 EPWFGIEQEYVLLDSDLXPFGWPTTGSPXAQGPYYCGVGAXXVXARDXXEXHYKCXLXAG 784
            PWFG+EQEY+++D D  P GWP  G P  QG YYCGVGA     R+  E HY+  L AG
Sbjct: 132 HPWFGMEQEYLIVDRDEHPLGWPKHGYPAPQGKYYCGVGADRAFGREVVETHYRACLHAG 191


>Z29560-1|CAA82655.1|  367|Caenorhabditis elegans Hypothetical
           protein K03H1.1 protein.
          Length = 367

 Score =  179 bits (436), Expect = 2e-45
 Identities = 81/180 (45%), Positives = 104/180 (57%)
 Frame = +2

Query: 245 LSKTLLDRYRDLPLPEDKVLATYVWIDGSGEHVRCKDRTLNYIPETPKDLPIWNYXXXXX 424
           L   ++D++  L     K+ ATYVWIDG+GE++R K RT + +P+  +D PIWNY     
Sbjct: 12  LGTAVIDQFLGLRPHPTKIQATYVWIDGTGENLRSKTRTFDKLPKRIEDYPIWNYDGSST 71

Query: 425 XXXXXXXXXXHLKPQAIYRDPFRRGNHVLVMCDTYDYSMQPTKTNHRIKCQEAYDRCXDH 604
                     +L+P A Y DPF  G + LVMCDT D+ MQPT T+HR  C E      D 
Sbjct: 72  GQAKGRDSDRYLRPVAAYPDPFLGGGNKLVMCDTLDHQMQPTATSHRQACAEIMHEIRDT 131

Query: 605 EPWFGIEQEYVLLDSDLXPFGWPTTGSPXAQGPYYCGVGAXXVXARDXXEXHYKCXLXAG 784
            PWFG+EQEY+++D D  P GWP  G P  QG YYC VGA     R+  E HY+  L AG
Sbjct: 132 RPWFGMEQEYLIVDRDEHPLGWPKHGFPDPQGKYYCSVGADRAFGREVVETHYRACLHAG 191


>AC006618-2|AAK68249.1|  340|Caenorhabditis elegans Glutamine
           synthetase (glutamate-ammonia ligase) protein 1 protein.
          Length = 340

 Score =  162 bits (394), Expect = 3e-40
 Identities = 66/158 (41%), Positives = 96/158 (60%)
 Frame = +2

Query: 311 YVWIDGSGEHVRCKDRTLNYIPETPKDLPIWNYXXXXXXXXXXXXXXXHLKPQAIYRDPF 490
           Y+WID + E++R K +T ++ P+TP DLPIWN+               +++P A+YRDPF
Sbjct: 35  YIWIDATQENMRGKTKTFDFEPKTPSDLPIWNFDGTSTGQSLGEGSDVYIRPIALYRDPF 94

Query: 491 RRGNHVLVMCDTYDYSMQPTKTNHRIKCQEAYDRCXDHEPWFGIEQEYVLLDSDLXPFGW 670
           R G + + +C+T  +  +P  TN R +C +  ++  D EPWFG+EQE+ LL +D  P+ W
Sbjct: 95  RPGPNKIALCETLTHDNKPHPTNTRQQCVDNMEKAKDQEPWFGMEQEFTLLGADKHPYNW 154

Query: 671 PTTGSPXAQGPYYCGVGAXXVXARDXXEXHYKCXLXAG 784
           P  G P  QGPYYCGVG+  V  R   E HY+  + AG
Sbjct: 155 PVNGFPAPQGPYYCGVGSDRVFGRHILEAHYRACMYAG 192


>Z81062-13|CAB82210.1|  333|Caenorhabditis elegans Hypothetical
           protein F15A4.13 protein.
          Length = 333

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 507 TWFPRRNGSLYMAWGFRCVSEFVLVV 430
           TWFPR    ++ A  F CV +F+L +
Sbjct: 142 TWFPRDLFRIFNAQSFYCVIDFILKI 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,241,371
Number of Sequences: 27780
Number of extensions: 351877
Number of successful extensions: 877
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)