Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_D12
         (878 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   1.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.5  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   8.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 734 CTVDSVXQSTPSTTSELWTVCRKCPRR 814
           C +    + +P++T  +    RKCPRR
Sbjct: 87  CGIGKECELSPNSTIAVCVCMRKCPRR 113


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = -2

Query: 874 GNMPHPXLSSGSLQRRSHMGPSGALPADGP 785
           G  P P  S  + QR S   PS   P  GP
Sbjct: 22  GPQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 867 CPIHXCHRDHSRGDRTWVLRGH 802
           C  H C +  SR    W+L+GH
Sbjct: 43  CKCHLCGKAFSR---PWLLQGH 61


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -1

Query: 776 MWSRVSIDXLSPPCRQNICPSTSA 705
           +W  +S+    PP  QN+  +T++
Sbjct: 756 LWQPLSVSIPPPPSAQNVPQNTNS 779


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,972
Number of Sequences: 438
Number of extensions: 4397
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)