Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_D11
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr...    28   2.0  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    28   2.0  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.5  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    27   4.6  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    26   6.1  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    26   6.1  
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    26   8.1  
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po...    26   8.1  

>SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 251

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 245 GRTPFPKFQKYESDSETDSCGSEQQEEYLDN--ELLHESSIIEDIQTLYSE 391
           GR  FPK     +  +TD    +  +  LDN  E L  S  ++ +Q+  SE
Sbjct: 15  GRGKFPKVSNTITQGDTDLWSQDTLQRKLDNSREKLEYSEFLKSVQSQLSE 65


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -1

Query: 180 SNVSVVFPENKLTNFNF--VNSKHSEFDQ 100
           S+VS  FPENK   F+F   N + S FDQ
Sbjct: 211 SSVSSGFPENKHGKFHFHIPNERRSRFDQ 239


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +3

Query: 216 LKYGPQSRHPEGRRSRSFKNTRVTVKQTLAGVNNKKNTWIMNYFMNHQSSK 368
           LK  PQ+     +  R   +  +T++   AG   K+N+W   Y    ++SK
Sbjct: 404 LKLHPQTPDRIVKVERKVHSLNMTLRSPKAGSAGKENSWRSKYLSEGKNSK 454


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +2

Query: 203 SSPDVEVRASIAPPGRTPFPKFQKYESD-SETDSCGSEQQEEYLDNELLHESSIIEDIQ 376
           S+     R+S    GR P P   K+  D  +      EQQ E  +NE L +     D++
Sbjct: 8   STKQQHYRSSDPYSGRRPIPTIPKFFRDRKQRAEKKEEQQREQTENEKLFDPITQRDVE 66


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +3

Query: 231 QSRHPEGRRSRSFKNTRVTVKQTLAGVNNKKNTWIMNYFMNHQSSKISKHYILNALNI 404
           QS H +   S   K+  V+  +  A VNNK+ +    YF   +   I   Y+   LN+
Sbjct: 204 QSTHEQTLSSPISKSASVSKSENKALVNNKRYSDSYFYFSKMRRISIDVDYVDEDLNL 261


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 476 DFDSPEYIELGDLQKNTYKNTTDKTSEEK 562
           D DS + IEL D  +   K T  K S+EK
Sbjct: 545 DVDSDDNIELSDSDEEEEKATARKESDEK 573


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 248 RTPFPKFQKYESDSETDSCGSEQQEE 325
           R+P PK +  E D E +   S++ EE
Sbjct: 180 RSPSPKIEILEDDEEIEDVASDKDEE 205


>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 508

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -2

Query: 638 KNYKK*IHTYKRKILISSRYMFKFDSSLRWFYLWCFCKYS 519
           KNY   +  + RK+ +  +  +   +++ WFYL+ F +YS
Sbjct: 177 KNYYLFLFKFNRKLALELQRAYI--NTMNWFYLYHFEQYS 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,040,025
Number of Sequences: 5004
Number of extensions: 58650
Number of successful extensions: 166
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)