Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_D11
(873 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68117-1|CAA92181.2| 459|Caenorhabditis elegans Hypothetical pr... 33 0.27
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 31 1.1
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 31 1.1
U28738-7|AAA68312.1| 341|Caenorhabditis elegans Hypothetical pr... 29 4.3
U28738-6|AAT92056.1| 274|Caenorhabditis elegans Hypothetical pr... 29 4.3
U28738-5|AAT92055.1| 342|Caenorhabditis elegans Hypothetical pr... 29 4.3
AC025716-1|AAK39606.1| 788|Caenorhabditis elegans Hypothetical ... 29 4.3
Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical pr... 29 5.7
AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein. 29 5.7
AC006662-2|AAL06035.1| 535|Caenorhabditis elegans Hypothetical ... 28 7.6
AC006662-1|AAM98008.2| 707|Caenorhabditis elegans Hypothetical ... 28 7.6
>Z68117-1|CAA92181.2| 459|Caenorhabditis elegans Hypothetical
protein F45E6.3 protein.
Length = 459
Score = 33.1 bits (72), Expect = 0.27
Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 3/140 (2%)
Frame = +2
Query: 212 DVEVRASIAPPGRTPFPKFQKYESDSE---TDSCGSEQQEEYLDNELLHESSIIEDIQTL 382
D + I PG + D++ +D S+ Q + DN++L S I +D++ L
Sbjct: 71 DQMIEQIIVEPGTASLQQSAAQNQDNDHPLSDHPTSDWQAFFQDNKVL--SQIDKDVRRL 128
Query: 383 YSERFEHIPVLRTPKRHVSXXXXXXXXXXXXDFDSPEYIELGDLQKNTYKNTTDKTSEEK 562
Y E + R P +H + S E+ D K K S+++
Sbjct: 129 YPEIQFFQLLSRFPHQHGMKYPLSRRVINHQELHSQEFGANRDGIVGCVKTNIAKQSQDE 188
Query: 563 NQI*TCTYWKLRFFFYTYVF 622
NQ + +FF Y+Y F
Sbjct: 189 NQAPNSEFHWHQFFEYSYKF 208
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical
protein F15D3.1a protein.
Length = 3674
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Frame = +2
Query: 293 TDSCGSEQQEEYLDNELLHESSIIEDIQTL--YSERFE 400
TD+ G EQ+ + +D LLH S + +++ L +SE+FE
Sbjct: 684 TDTEGEEQKNQLVDKFLLHISKLSHELEPLQDWSEKFE 721
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical
protein F15D3.1a protein.
Length = 3674
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Frame = +2
Query: 293 TDSCGSEQQEEYLDNELLHESSIIEDIQTL--YSERFE 400
TD+ G EQ+ + +D LLH S + +++ L +SE+FE
Sbjct: 684 TDTEGEEQKNQLVDKFLLHISKLSHELEPLQDWSEKFE 721
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Frame = +2
Query: 293 TDSCGSEQQEEYLDNELLHESSIIEDIQTL--YSERFE 400
TD+ G EQ+ + +D LLH S + +++ L +SE+FE
Sbjct: 684 TDTEGEEQKNQLVDKFLLHISKLSHELEPLQDWSEKFE 721
>U28738-7|AAA68312.1| 341|Caenorhabditis elegans Hypothetical
protein T28D9.3a protein.
Length = 341
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = -2
Query: 320 LVVHSRKSLFHCHSRI--FETSGTASFRVARLRPVLQHLVTKPESLSLL 180
LV+ +RKS + HS + + + +A + ARL PVL + + P S +L+
Sbjct: 185 LVLEARKSFYSGHSAVSLYCATWSALYIQARLGPVLNNRIVVPISQTLM 233
>U28738-6|AAT92056.1| 274|Caenorhabditis elegans Hypothetical
protein T28D9.3c protein.
Length = 274
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = -2
Query: 320 LVVHSRKSLFHCHSRI--FETSGTASFRVARLRPVLQHLVTKPESLSLL 180
LV+ +RKS + HS + + + +A + ARL PVL + + P S +L+
Sbjct: 186 LVLEARKSFYSGHSAVSLYCATWSALYIQARLGPVLNNRIVVPISQTLM 234
>U28738-5|AAT92055.1| 342|Caenorhabditis elegans Hypothetical
protein T28D9.3b protein.
Length = 342
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = -2
Query: 320 LVVHSRKSLFHCHSRI--FETSGTASFRVARLRPVLQHLVTKPESLSLL 180
LV+ +RKS + HS + + + +A + ARL PVL + + P S +L+
Sbjct: 186 LVLEARKSFYSGHSAVSLYCATWSALYIQARLGPVLNNRIVVPISQTLM 234
>AC025716-1|AAK39606.1| 788|Caenorhabditis elegans Hypothetical
protein Y39G10AR.11 protein.
Length = 788
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 278 ESDSETDSCGSEQQEEYLDNELLHESSIIEDIQTLYSERFE 400
+SD +DS SE+ EEY D L + + E+ L E E
Sbjct: 740 DSDCSSDSSDSEEDEEYRDMPKLKDETTAENSWELVGEEEE 780
>Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical protein
F26A3.8 protein.
Length = 1601
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/76 (26%), Positives = 31/76 (40%)
Frame = +2
Query: 341 LLHESSIIEDIQTLYSERFEHIPVLRTPKRHVSXXXXXXXXXXXXDFDSPEYIELGDLQK 520
+ HES++ L++ RFE +PV P + PE I + DL
Sbjct: 1462 IFHESALKTYYNILFNLRFEELPVSSDPTITAETMDRECEPFV---IELPENINVNDLIN 1518
Query: 521 NTYKNTTDKTSEEKNQ 568
N K+T T + + Q
Sbjct: 1519 NMKKHTNVSTVKMRRQ 1534
>AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.
Length = 1601
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/76 (26%), Positives = 31/76 (40%)
Frame = +2
Query: 341 LLHESSIIEDIQTLYSERFEHIPVLRTPKRHVSXXXXXXXXXXXXDFDSPEYIELGDLQK 520
+ HES++ L++ RFE +PV P + PE I + DL
Sbjct: 1462 IFHESALKTYYNILFNLRFEELPVSSDPTITAETMDRECEPFV---IELPENINVNDLIN 1518
Query: 521 NTYKNTTDKTSEEKNQ 568
N K+T T + + Q
Sbjct: 1519 NMKKHTNVSTVKMRRQ 1534
>AC006662-2|AAL06035.1| 535|Caenorhabditis elegans Hypothetical
protein H23L24.3a protein.
Length = 535
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 317 QEEYLDNELLHESSIIEDIQTLYSERFEHI 406
+EEY +N L E+ ++D+QT+ R H+
Sbjct: 321 EEEYQNNSLKGETKSLDDMQTIKQRRKPHL 350
>AC006662-1|AAM98008.2| 707|Caenorhabditis elegans Hypothetical
protein H23L24.3b protein.
Length = 707
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 317 QEEYLDNELLHESSIIEDIQTLYSERFEHI 406
+EEY +N L E+ ++D+QT+ R H+
Sbjct: 493 EEEYQNNSLKGETKSLDDMQTIKQRRKPHL 522
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,349,929
Number of Sequences: 27780
Number of extensions: 318481
Number of successful extensions: 1004
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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