Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_D10
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    30   0.52 
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    28   2.1  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    27   3.6  
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces...    26   6.3  

>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 250 QTTSGFKFRNILIFFKQLSKFDCHYNILHDF 158
           +T + +  R   IF K  +K  CH+NIL  F
Sbjct: 129 ETRANYPVRGFDIFMKHATKHSCHFNILKCF 159


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +1

Query: 256  KEDVIELMIHQLNLIQCKNMICMKMK*HLKTQMMKRMTSKL*CWII 393
            +E +++ + HQL L Q +++IC K K  +K   +K   S    W++
Sbjct: 2117 EETLVDNLYHQLTLYQLQDLICSKCK-TVKQWSLKERCSCSGEWVL 2161


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = -1

Query: 479 FNSAYNSTFLPYYGAEVMFRNMKTGTISRIIQHYNFEVILFIIWVFKCYFIFIQIM 312
           ++S Y+S  L    + V F  +       +I   NF  + F++W+  C F  I ++
Sbjct: 534 YSSLYSS--LNSSNSTVSFSGIFDRVEKSVISELNFSFLFFLLWLLICAFGLIGVL 587


>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 333

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 368 VILFIIWVFKCYFIFIQIMF 309
           VI++++WV  CY +F++  F
Sbjct: 176 VIIWLLWVVICYTLFLRAKF 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,084,424
Number of Sequences: 5004
Number of extensions: 58884
Number of successful extensions: 175
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)