Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_D10
         (899 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1187 + 24667044-24667091,24667196-24667274,24667520-246676...    29   3.8  
04_04_1167 + 31432731-31433769,31433893-31433941,31434363-314344...    29   6.7  
07_01_0491 + 3701445-3701782,3703000-3704101                           28   8.8  
05_06_0205 - 26364127-26365234,26366677-26367035                       28   8.8  

>07_03_1187 +
           24667044-24667091,24667196-24667274,24667520-24667695,
           24668216-24668766,24669080-24669941
          Length = 571

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = -1

Query: 521 LIVFWNFYVRFCVSFNSAYNSTFLPYYGAEVMFRNMKTGTIS-RIIQHYNFEVILFIIWV 345
           L+  W   + FCV   S  ++TF+      VM  N K G++S      Y+FEVI    WV
Sbjct: 341 LLPIWATGIFFCVGI-SQMHTTFIQQ--GTVM--NTKIGSLSIPAASLYSFEVICVTFWV 395

Query: 344 FKCYFIFIQI 315
           F    + I +
Sbjct: 396 FLVNKVIIPV 405


>04_04_1167 +
           31432731-31433769,31433893-31433941,31434363-31434427,
           31435237-31435346,31436327-31436388,31438067-31438113,
           31438148-31438272,31438651-31438764,31438852-31438979,
           31439059-31439154,31439565-31439706,31439799-31439893,
           31439966-31440095,31440179-31440323,31440430-31440656
          Length = 857

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -1

Query: 626 VDVCFIXRR--HYNHVYSAPSSLHIRLSWS 543
           + V F+ RR   Y  VYS PS +H  L+W+
Sbjct: 801 IKVSFLTRRPGDYAEVYSDPSKIHDELNWT 830


>07_01_0491 + 3701445-3701782,3703000-3704101
          Length = 479

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 731 DSSSVGFGHSCNTLSLNFSNSFTISALF 648
           D + +GFG SCN +  N + S+  +A F
Sbjct: 390 DCTPLGFGSSCNGMDTNGNASYAFNAYF 417


>05_06_0205 - 26364127-26365234,26366677-26367035
          Length = 488

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 737 NRDSSSVGFGHSCNTLSLNFSNSFTISALFIGIDK 633
           N D + +G+G SCN LS + + S+  +  F  +D+
Sbjct: 397 NADCTPLGYGSSCNNLSHDGNISYAFNIYFQTMDQ 431


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,977,568
Number of Sequences: 37544
Number of extensions: 312357
Number of successful extensions: 655
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)