Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_D10
         (899 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81479-9|CAE17735.1|  215|Caenorhabditis elegans Hypothetical pr...    29   6.0  
U23516-5|AAG38885.1|  449|Caenorhabditis elegans Glycosylation r...    28   7.9  
AF082010-1|AAD03022.1|  449|Caenorhabditis elegans UDP-N-acetylg...    28   7.9  

>Z81479-9|CAE17735.1|  215|Caenorhabditis elegans Hypothetical
           protein C34F6.11 protein.
          Length = 215

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 401 ISRIIQHYNFEVILFIIWVFKCYFIFIQIMF 309
           + RI+Q  N   +   IW F CY ++I  +F
Sbjct: 40  VDRIVQERNLLSVPEGIWTFFCYSVYINFIF 70


>U23516-5|AAG38885.1|  449|Caenorhabditis elegans Glycosylation
           related protein 13 protein.
          Length = 449

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 840 IPXTAVKRFVTCILSSLSIKLITPNVKCSL*DPD 739
           +P TA    VTC ++ + I L+    K S  +PD
Sbjct: 407 VPRTAYDGIVTCFINGIRIYLVPDRTKVSAYNPD 440


>AF082010-1|AAD03022.1|  449|Caenorhabditis elegans
           UDP-N-acetylglucosamine:a-3-D-mannosideb-1,
           2-N-acetylglucosaminyltransferase I protein.
          Length = 449

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 840 IPXTAVKRFVTCILSSLSIKLITPNVKCSL*DPD 739
           +P TA    VTC ++ + I L+    K S  +PD
Sbjct: 407 VPRTAYDGIVTCFINGIRIYLVPDRTKVSAYNPD 440


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,889,630
Number of Sequences: 27780
Number of extensions: 322353
Number of successful extensions: 859
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)