Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_D09
         (951 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    56   2e-06
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    48   4e-04
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    47   6e-04
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    46   0.001
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    39   0.16 
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    36   1.1  
UniRef50_UPI0000DA2B86 Cluster: PREDICTED: hypothetical protein;...    33   8.1  

>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 55.6 bits (128), Expect = 2e-06
 Identities = 31/57 (54%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = +3

Query: 405 CINESATARGXAVCVLGALPXPRSLTRXARSFGCGXRYH-XTPRREYGYPQNQGIPQ 572
           CI + ATAR  AV VL ALP  RS TR  RS GCG      +P R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 48.0 bits (109), Expect = 4e-04
 Identities = 24/30 (80%), Positives = 24/30 (80%)
 Frame = +2

Query: 494 VVRLRXTVSPHSKAGIRLSTESGDTAGXNM 583
           VVRLR  VS HSKA IRLSTESGD AG NM
Sbjct: 30  VVRLRRAVSAHSKAVIRLSTESGDNAGKNM 59


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 47.2 bits (107), Expect = 6e-04
 Identities = 20/25 (80%), Positives = 21/25 (84%)
 Frame = +1

Query: 403 SALMNRPPXGXRRFAYWAPFRFLAH 477
           +ALMNRP  G RRFAYWA FRFLAH
Sbjct: 25  AALMNRPTRGERRFAYWALFRFLAH 49


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 46.0 bits (104), Expect = 0.001
 Identities = 19/29 (65%), Positives = 21/29 (72%)
 Frame = +3

Query: 441 VCVLGALPXPRSLTRXARSFGCGXRYHXT 527
           +C  G +P PRSLTR ARSFGCG RY  T
Sbjct: 30  ICDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 39.1 bits (87), Expect = 0.16
 Identities = 17/27 (62%), Positives = 17/27 (62%)
 Frame = -2

Query: 605 PFAGLLFTCXFLRYPLILWITVFPPWS 525
           P    L TC F  YPLILWITV PP S
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLS 45


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 36.3 bits (80), Expect = 1.1
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = -3

Query: 457 APNTQTAXPRAVADSLMQ 404
           APNTQTA PRA+ADSLMQ
Sbjct: 331 APNTQTASPRALADSLMQ 348


>UniRef50_UPI0000DA2B86 Cluster: PREDICTED: hypothetical protein;
           n=1; Rattus norvegicus|Rep: PREDICTED: hypothetical
           protein - Rattus norvegicus
          Length = 138

 Score = 33.5 bits (73), Expect = 8.1
 Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
 Frame = +3

Query: 447 VLGALPXPRSLTRXARSF--GCGXRYHX-TPRREYGYPQNQGIPQEXTCEQKASKRPGTX 617
           VLG  P PR     AR+    CG      TP      PQN G P+     Q+  +RPG  
Sbjct: 66  VLGQGPPPRPRPAPARAACPACGGESSKRTPGPPDPRPQNSGPPRPRRRHQEGGRRPGAK 125

Query: 618 KXPXCWRXXIG 650
             P   R  +G
Sbjct: 126 VAPQLRRAGLG 136


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 534,115,595
Number of Sequences: 1657284
Number of extensions: 6823351
Number of successful extensions: 10171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10163
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 87774035305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)