Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_D08
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.67 
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    27   2.7  
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||...    27   2.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.2  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 16/50 (32%), Positives = 17/50 (34%)
 Frame = -1

Query: 884 PPPXPXGLGXXXXFXXPXXXXXXXXGXGXPPPXXKKKXXGXGGPXXGGGG 735
           PPP P G G    F           G G  P   +    G GG   G GG
Sbjct: 200 PPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGG 249


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 184 VVFXIXFFXFVXSNCFXHNLVVGIYRKHLSALLLST 77
           + +   F      NCF H LV+G   + L  +LLST
Sbjct: 444 IAYISGFVPLFIYNCFIHKLVMGDKFEFLPLMLLST 479


>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +2

Query: 170 NPEYDYXXXLXLXGDPG 220
           NPEYDY   L L GD G
Sbjct: 2   NPEYDYLFKLLLIGDSG 18


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/43 (30%), Positives = 13/43 (30%)
 Frame = -3

Query: 885 PPPPPPXFGXXXXFXXXXXXXXXXXXXGGPPPXXKKKXXXGGG 757
           PPPPPP                     GGPPP        G G
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAG 774


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,151,272
Number of Sequences: 5004
Number of extensions: 28674
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)