Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_D08
(887 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 34 0.13
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 31 1.2
01_01_0995 + 7875273-7875495,7876196-7876274,7876422-7876536,787... 31 1.2
05_04_0173 + 18724367-18724476,18724570-18724651,18724750-187248... 30 2.1
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 30 2.8
11_06_0562 + 25003246-25003746,25004975-25005214,25005576-250060... 29 4.9
11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859... 29 4.9
04_03_0803 - 19835284-19836050,19836337-19836418 29 4.9
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 29 4.9
02_05_0686 - 30900748-30902167,30903442-30904742 29 4.9
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998... 28 8.6
01_01_0796 + 6190931-6192745 28 8.6
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 34.3 bits (75), Expect = 0.13
Identities = 25/85 (29%), Positives = 27/85 (31%), Gaps = 5/85 (5%)
Frame = -1
Query: 887 PPPPXPXGLGXXXXFXXPXXXXXXXX-----GXGXPPPXXKKKXXGXGGPXXGGGGXXPX 723
PPPP GLG P G PPP + G GGP G P
Sbjct: 1149 PPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPP 1208
Query: 722 GFFFXPPXIXXXXPPXXXGXGXXXP 648
PP + PP G G P
Sbjct: 1209 ----MPPGVPGGPPPPPGGRGLPAP 1229
Score = 28.7 bits (61), Expect = 6.5
Identities = 32/113 (28%), Positives = 32/113 (28%), Gaps = 1/113 (0%)
Frame = -1
Query: 884 PPPXPXGLGXXXXFXXPXXXXXXXXGXGXPPPXXKKKXXGXGGPXXGGGGXXPXGFFFXP 705
PPP P LG P G G PPP P GG G P
Sbjct: 1085 PPPLPPTLGDYGVAPPPPSI-----GAGAPPPPPPPGGITGVPPPPPIGGL---GGHQAP 1136
Query: 704 PXIXXXXPPXXXGXGXXXPXXX-GXXGXPPXXXXXXXXXXXXXPPXLWGGXNP 549
P PP G G P G G PP PP GG P
Sbjct: 1137 PA-----PPLPEGIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAP 1184
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/50 (32%), Positives = 16/50 (32%)
Frame = +1
Query: 661 PXPXXXGGXFXXXXGGXKKXPXGXXPPPPXXGPPXPXXFFFXXGGGXPXP 810
P P G P PP P GPP P GGG P P
Sbjct: 338 PSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPP 387
Score = 30.3 bits (65), Expect = 2.1
Identities = 23/90 (25%), Positives = 23/90 (25%), Gaps = 1/90 (1%)
Frame = -1
Query: 887 PPPPXPXGLGXXXXFXXPXXXXXXXXGXGXPPPXXKKKXXGXG-GPXXGGGGXXPXGFFF 711
PP P P G G P PPP G G GP P
Sbjct: 304 PPHPLPPGAGAGAGTGAPPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRP 363
Query: 710 XPPXIXXXXPPXXXGXGXXXPXXXGXXGXP 621
P PP G G P G P
Sbjct: 364 PGPGPGPPPPPGAAGRGGGGPPPPALPGGP 393
>01_01_0995 +
7875273-7875495,7876196-7876274,7876422-7876536,
7878507-7878761
Length = 223
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -1
Query: 782 KKKXXGXGGPXXGGGGXXPXGFFFXPPXIXXXXPP 678
++K G GG GGGG G F PP PP
Sbjct: 9 REKAKGGGGGGGGGGGGGEYGTFQGPPSYPPPRPP 43
>05_04_0173 +
18724367-18724476,18724570-18724651,18724750-18724840,
18725060-18725172,18725270-18725342,18725445-18725565,
18725665-18725782,18726609-18726748,18726824-18726881,
18727007-18727077,18727181-18727733
Length = 509
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/58 (32%), Positives = 20/58 (34%)
Frame = -1
Query: 809 GXGXPPPXXKKKXXGXGGPXXGGGGXXPXGFFFXPPXIXXXXPPXXXGXGXXXPXXXG 636
G G PPP G GGP G GG G + P P G G P G
Sbjct: 443 GRGPPPPYPGSGMAGTGGPRGGVGGGYGGGSNY--PQQGGPYGPSGPGRGSNYPQQGG 498
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 737 PPPPXXXPPPXXXFFFXXGGGPP 805
PPPP PPP F G GPP
Sbjct: 55 PPPPPPGPPPPHQPQFNFGPGPP 77
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = -2
Query: 802 GXPPPXKKKXXXGXGXXXXGGGXXPPXXFFXPPP 701
G PPP + + G G PP ++ PPP
Sbjct: 61 GPPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPP 94
>11_06_0562 +
25003246-25003746,25004975-25005214,25005576-25006097,
25006184-25007248,25007350-25007656,25007761-25008001,
25008104-25008302,25008771-25008852,25008959-25009209,
25010061-25010219,25010220-25010603
Length = 1316
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -1
Query: 794 PPXXKKKXXGXGGPXXGGGGXXPXG 720
PP G GGP GGGG P G
Sbjct: 64 PPTTAAGGQGGGGPVSGGGGSAPGG 88
>11_06_0561 -
24984960-24985205,24985283-24985354,24985906-24985977,
24986612-24986782,24987464-24987653,24987733-24987976,
24988162-24988474,24988687-24989517,24989628-24989672,
24989677-24989790,24989877-24990371,24990627-24990824,
24990902-24991357
Length = 1148
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -1
Query: 797 PPPXXKKKXXGXGGPXXGGGGXXPXG 720
PP + G GGP GGGG P G
Sbjct: 64 PPTAAGGQGGGGGGPVSGGGGSAPGG 89
>04_03_0803 - 19835284-19836050,19836337-19836418
Length = 282
Score = 29.1 bits (62), Expect = 4.9
Identities = 20/75 (26%), Positives = 22/75 (29%), Gaps = 2/75 (2%)
Frame = -3
Query: 885 PPPPPPXFGXXXXFXXXXXXXXXXXXXGGPPPXXKKKXXXGGGXXXGG--GGXXPPXXFF 712
PPPPPP PPP + G GG GG PP
Sbjct: 197 PPPPPPSRCGGCDHADCGGWCGGQPPINCPPPPPPSRCGGCGHGDCGGWCGGHRPPINCP 256
Query: 711 XPPXXXXKXXPXXXG 667
PP + P G
Sbjct: 257 APPPPCCQQQPWGGG 271
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = +1
Query: 667 PXXXGGXFXXXXGGXKKXPXGXXPPPPXXGPPXP 768
P G GG + P PPPP PP P
Sbjct: 250 PPAAPGTLPNGSGGPPRPPPPQVPPPPPQAPPPP 283
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.1 bits (62), Expect = 4.9
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 721 PXGXXPPPPXXGPPXP 768
P G PPPP GPP P
Sbjct: 341 PKGPPPPPPAKGPPPP 356
>07_03_0965 -
22996575-22999112,22999202-22999636,22999717-22999801,
22999888-22999957,23000050-23000293,23000396-23000482,
23000655-23000706,23000830-23001226,23001324-23001648,
23001748-23001914,23002007-23002547
Length = 1646
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 809 GXGXPPPXXKKKXXGXGGPXXGGGG 735
G G PPP + + G GG G GG
Sbjct: 19 GGGPPPPRRRLRSSGGGGGGSGSGG 43
>01_01_0796 + 6190931-6192745
Length = 604
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 704 GGXKKXXGGXXPPPPXXXPPP 766
GG + G PPPP PPP
Sbjct: 182 GGKRPIQGSSVPPPPPPPPPP 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,606,102
Number of Sequences: 37544
Number of extensions: 607943
Number of successful extensions: 4727
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4157
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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