Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_D07
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr...    90   5e-19
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    27   4.8  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    26   6.4  
SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4 |Schi...    26   6.4  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    26   8.4  

>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 322

 Score = 89.8 bits (213), Expect = 5e-19
 Identities = 45/86 (52%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
 Frame = +1

Query: 280 MSALDQLKQHSTVV-ADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGK 456
           MS+L+QLK   TVV +DTGDFE++ +YKP DATTNPSLIL+A+   QY  ++D A+ Y K
Sbjct: 1   MSSLEQLKATGTVVVSDTGDFESIAKYKPQDATTNPSLILAASKKPQYAALVDAAVDYAK 60

Query: 457 DNGSSIEEQVAETLDMLSVLFGCEIL 534
             G SI  Q+    D L + FG +IL
Sbjct: 61  AKGGSINSQIEIAFDRLLIEFGTKIL 86



 Score = 54.0 bits (124), Expect = 3e-08
 Identities = 25/35 (71%), Positives = 27/35 (77%)
 Frame = +1

Query: 724 KHGIHXNLTLXXSLYQAIACAEANVXLXSPFVGRI 828
           + GIH NLTL  S  QA+ACAEANV L SPFVGRI
Sbjct: 148 EEGIHCNLTLLFSFVQAVACAEANVTLISPFVGRI 182



 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 25/56 (44%), Positives = 32/56 (57%)
 Frame = +2

Query: 521 GVKY*KLFLXRVSVEVDARLSFDKDASIAXAIKFINLFAEHGIKKERILXXLASTW 688
           G K   +   RVS EVDAR SFD   +I  A   I L+   GI +ER+L  +AST+
Sbjct: 82  GTKILAIVPGRVSTEVDARYSFDTQTTIEKARHLIKLYEAEGIGRERVLIKIASTY 137


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +1

Query: 241 VSMSGEPD-TKRTKMSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQ 417
           VS S  PD TKR   S L ++K    +       ++ K+ KP+   T+  + L+ A M  
Sbjct: 141 VSQSFFPDVTKRLPCSCLSEIKNIDDLGLKQRILDSYKKQKPSGQLTSMQIELAKA-MFN 199

Query: 418 YQHI 429
           YQ +
Sbjct: 200 YQDV 203


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +1

Query: 313 TVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGKDNGSSIEEQVAE 492
           T +AD  +     + +  D  T   L+L + G+E Y    D A      N  S+EE + +
Sbjct: 273 TTIADYKEVAIQNKIEDDDTWTAQELVLLSEGVEMYSD--DWAKVASHVNTKSVEECILK 330

Query: 493 TLDMLS 510
            L++ S
Sbjct: 331 FLNLPS 336


>SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 377

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 780 GNSLVQRXXQCKITMDSMLXXPTLXLLEFLXQV 682
           GN L+ R   C +    +L  P+  +L+FL ++
Sbjct: 208 GNELIYRENLCSVAQCLLLAIPSPIVLQFLQEI 240


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -2

Query: 528 FTPKKHTQHIQSFSHLFFNGASIILSIFNS 439
           FTPK +    ++++   FNG+ + +S++N+
Sbjct: 166 FTPKGNPSAKETYNVYEFNGSGVAMSMYNT 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,867,121
Number of Sequences: 5004
Number of extensions: 54336
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)