Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_D07
         (904 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0355 - 3122374-3122520,3122912-3123047,3123124-3123221,312...    44   1e-04
09_04_0315 + 16600387-16600557,16600652-16600801,16600874-166008...    29   5.1  
04_04_1498 + 34002677-34003104,34004427-34004532,34004643-340048...    29   6.7  
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043...    28   8.8  

>08_01_0355 -
           3122374-3122520,3122912-3123047,3123124-3123221,
           3123724-3123801,3123876-3123945,3124452-3124516,
           3124606-3124686,3124822-3124926,3125002-3125085,
           3125175-3125250,3125358-3125436,3125526-3125646,
           3125768-3125827
          Length = 399

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 19/57 (33%), Positives = 33/57 (57%)
 Frame = +2

Query: 518 LGVKY*KLFLXRVSVEVDARLSFDKDASIAXAIKFINLFAEHGIKKERILXXLASTW 688
           +G +   L   RVS E+DARL++D    I    + + L+++H +  ER+L  + +TW
Sbjct: 145 VGAEMAHLVPGRVSTEIDARLAYDTQGIIQRVHELLKLYSDHDVLSERLLFKIPATW 201


>09_04_0315 +
           16600387-16600557,16600652-16600801,16600874-16600897,
           16601519-16602694,16603120-16603266,16603477-16603752
          Length = 647

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 614 LLXLCLHPYQMITLHQLPLILXPGIIFNISHPKSTLSISKVS 489
           L+   +HP  M TL   P+++  G   NI+H  S++   K++
Sbjct: 326 LMKDAIHPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIA 367


>04_04_1498 +
           34002677-34003104,34004427-34004532,34004643-34004811,
           34004901-34005088,34005644-34005763
          Length = 336

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
 Frame = +1

Query: 226 CNISLVSMSGEPDTKRTKMSALDQLKQHSTVVADTGDFEAMKEYKPTDATT-------NP 384
           CN  L  + G   T   KM+ L  L +H T +         K++KP++  T        P
Sbjct: 203 CNDELRVVFGTDTTDMFKMNKL--LAKHITPLDPKDQIREAKKFKPSNVATQPMPLINQP 260

Query: 385 SLILSAA-----GMEQYQHILDKAIKYGKD--NGSSIEEQVAETL---DMLSVLFGCE 528
           S+++S A     GME      D A++Y  D    + +E+ +  ++     L  LFGCE
Sbjct: 261 SVVISDALAKFIGMEGTVP-QDDALRYLWDYIKANQLEDAITGSILCDSKLQELFGCE 317


>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
            21204453-21205031,21205176-21205484,21205638-21205718,
            21205971-21206279,21207430-21207816,21207964-21208767,
            21208856-21209218,21209437-21209667,21209934-21210278,
            21210494-21210712,21210759-21210815,21210978-21211322,
            21211538-21211756,21211803-21211859,21212022-21212366,
            21212584-21212814,21213100-21213458
          Length = 4322

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 22/87 (25%), Positives = 37/87 (42%)
 Frame = +1

Query: 250  SGEPDTKRTKMSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHI 429
            S EP  ++T + A DQ K   T+V   G   A    K     T  +L  +   M    ++
Sbjct: 3142 SAEPTKRKTVVGASDQAKASETIVDREGMMTAPYREKSLCPDTQHAL-RNVLEMSPSDNL 3200

Query: 430  LDKAIKYGKDNGSSIEEQVAETLDMLS 510
             D     G+++GS  E    ++ D ++
Sbjct: 3201 TDNPFA-GQEHGSFSEGSTTDSRDAIT 3226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,138,187
Number of Sequences: 37544
Number of extensions: 301367
Number of successful extensions: 552
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)