Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_D07
         (904 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-1|AAK93861.1|  319|Caenorhabditis elegans Hypothetical ...   103   1e-22
AC006729-2|AAM15613.1|  165|Caenorhabditis elegans Hypothetical ...    42   6e-04

>AC006729-1|AAK93861.1|  319|Caenorhabditis elegans Hypothetical
           protein Y24D9A.8a protein.
          Length = 319

 Score =  103 bits (248), Expect = 1e-22
 Identities = 49/86 (56%), Positives = 66/86 (76%)
 Frame = +1

Query: 280 MSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGKD 459
           MS L+QLK  S VVADTGDF A+KE++PTDATTNPSLIL+A+ MEQY  ++D+++ Y K+
Sbjct: 1   MSVLEQLKGASVVVADTGDFNAIKEFQPTDATTNPSLILAASKMEQYAALIDQSVAYAKE 60

Query: 460 NGSSIEEQVAETLDMLSVLFGCEILK 537
           + S  +E +   +D L V+FG EILK
Sbjct: 61  HASGHQEVLQAAMDRLFVVFGKEILK 86



 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 24/38 (63%), Positives = 28/38 (73%)
 Frame = +1

Query: 724 KHGIHXNLTLXXSLYQAIACAEANVXLXSPFVGRIXXW 837
           KHGIH N+TL  +  QA+ACAE+ V L SPFVGRI  W
Sbjct: 148 KHGIHCNMTLLFNFEQAVACAESGVTLISPFVGRIMDW 185



 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 28/46 (60%), Positives = 32/46 (69%)
 Frame = +2

Query: 551 RVSVEVDARLSFDKDASIAXAIKFINLFAEHGIKKERILXXLASTW 688
           RVS EVDARLSFD  ASI  A+  I  + + GI K+RIL  LASTW
Sbjct: 91  RVSTEVDARLSFDTQASIDRALGLIAQYEKEGISKDRILIKLASTW 136


>AC006729-2|AAM15613.1|  165|Caenorhabditis elegans Hypothetical
           protein Y24D9A.8b protein.
          Length = 165

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 18/31 (58%), Positives = 22/31 (70%)
 Frame = +1

Query: 745 LTLXXSLYQAIACAEANVXLXSPFVGRIXXW 837
           +TL  +  QA+ACAE+ V L SPFVGRI  W
Sbjct: 1   MTLLFNFEQAVACAESGVTLISPFVGRIMDW 31


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,445,788
Number of Sequences: 27780
Number of extensions: 291606
Number of successful extensions: 649
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)