Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_D05
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac...   157   2e-39
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch...   155   1e-38
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    31   0.17 
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    29   0.89 
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb...    28   2.1  
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce...    27   2.7  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    26   6.3  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   8.3  

>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score =  157 bits (381), Expect = 2e-39
 Identities = 69/136 (50%), Positives = 96/136 (70%), Gaps = 2/136 (1%)
 Frame = +2

Query: 83  MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 262
           M KI+KPGKV L+  GR+AG+K ++++  D+G+   P+GHA VAG++RYP KV K MG  
Sbjct: 1   MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60

Query: 263 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 436
           +I +RS++KPF+KVVNYNHLMPTRY ++    K   +A   K+P +R   R   +  FEE
Sbjct: 61  RIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEE 120

Query: 437 RYKSGKNKWFFQKLRF 484
           +Y+SGK+ WFF  LRF
Sbjct: 121 KYQSGKSAWFFTPLRF 136


>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 136

 Score =  155 bits (375), Expect = 1e-38
 Identities = 67/136 (49%), Positives = 96/136 (70%), Gaps = 2/136 (1%)
 Frame = +2

Query: 83  MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 262
           M KI+KPGKV LV  GR+AG+K ++++N D+G+   P+GHA VAG++RYP KV K MG  
Sbjct: 1   MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60

Query: 263 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 436
           +I KRS++KPF+KV+NYNHLMPTRY ++    K   +     +P++R   +   +  FEE
Sbjct: 61  RIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEE 120

Query: 437 RYKSGKNKWFFQKLRF 484
           +Y++GK+ WFF  LRF
Sbjct: 121 KYQTGKSAWFFTPLRF 136


>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 10/34 (29%), Positives = 23/34 (67%)
 Frame = +2

Query: 74  PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDE 175
           P+K+   + PG V ++L+GR+ G++ +V+   ++
Sbjct: 45  PTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED 78


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 118 QHYFTRLHYFAHLGGIFPLLVDIESKILRNSL 23
           Q YFT ++ F   G +FP +VD  + IL + L
Sbjct: 803 QQYFTAIYKFEGCGSVFPFVVDPFTTILDDVL 834


>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 225

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 254 GKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDF-SFEKFSAKDLKDP 388
           G + I  R K  P  K+VNYNH   +    +  +F K    D+ DP
Sbjct: 28  GNHWIFARFKFYPLNKIVNYNHFHSSSCQSEAKNFYKQFEGDISDP 73


>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 89  KIMKPGKVVLVLSGRYAGRKAIVVKNYD 172
           + ++ G+VVLV  G Y G+ A++V   D
Sbjct: 6   RYVEVGRVVLVTKGEYTGKLAVIVDIVD 33


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -2

Query: 189 LSEVPSS*FLTTIALRPAYRPLRTSTTLPGFIILPILEGYSLY 61
           L E+P + F  T+    AY P   S T+ G      + G  +Y
Sbjct: 689 LEEIPYNKFFKTVEKNEAYNPSSKSATIDGLQRYTSMIGNQIY 731


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 159 SRITTKVPPTSHTGMPSSLVSTGT 230
           SR+ T +PP S + +P+  +ST +
Sbjct: 177 SRLPTPLPPPSSSSLPTGTISTNS 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,549,982
Number of Sequences: 5004
Number of extensions: 48001
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)