Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_D04
(877 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0133 + 1062365-1063057,1063210-1063318,1063914-1064005,106... 33 0.40
11_01_0535 + 4234282-4235082 30 2.1
01_01_0490 + 3620523-3623403,3623524-3623996 30 2.1
10_08_0445 + 17989438-17990895 30 2.8
04_01_0399 - 5214183-5214206,5215437-5215502,5219537-5219635,521... 29 3.7
01_06_0430 + 29299970-29300031,29300162-29300294,29301057-293011... 29 3.7
08_02_0824 + 21561699-21562415,21563294-21563362,21563424-215634... 28 8.5
08_02_0640 - 19636968-19638230 28 8.5
03_02_0101 - 5623661-5623669,5623756-5624408,5624504-5624640,562... 28 8.5
02_05_0441 + 29040250-29040524,29040656-29040772,29040834-290411... 28 8.5
>08_01_0133 +
1062365-1063057,1063210-1063318,1063914-1064005,
1064399-1064560,1064718-1064834,1065029-1065127
Length = 423
Score = 32.7 bits (71), Expect = 0.40
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 187 PPQRKQEASWVLYETDAND-LPEDAPPHVPPSAEKRPWKIVWRNVILFFILHVGGVYGGY 363
PP++K+ + + ++ + A P PP PW+ W +V + +L VGG+ G
Sbjct: 154 PPKKKKVVVVESADLETHESVGTAASPPPPPPVALTPWEKFWISVAV--VLGVGGLVFGL 211
Query: 364 LFLFK 378
+FL K
Sbjct: 212 IFLIK 216
>11_01_0535 + 4234282-4235082
Length = 266
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 385 WRTSIFAIFLYLCSGLGITAGAHRLWAHKSYKARLP 492
W + +A FLY C LG A RLW + + P
Sbjct: 220 WTPAAWAFFLYTCVNLGPRARDQRLWYISKFGDKYP 255
>01_01_0490 + 3620523-3623403,3623524-3623996
Length = 1117
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 148 KLIIISTLFQGXMPPQRKQEASWVLYETDANDLPEDAPPHV 270
KL++I G +PP+ S V + N L D PP V
Sbjct: 446 KLLLIDNTLSGEIPPEIGNCTSLVRFRASGNHLAGDIPPEV 486
>10_08_0445 + 17989438-17990895
Length = 485
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +1
Query: 229 TDANDLPEDAPPHV--PPSAEKRPWK 300
T N P +PPHV PP+ +RPW+
Sbjct: 408 TATNMTPPPSPPHVRAPPAPARRPWR 433
>04_01_0399 -
5214183-5214206,5215437-5215502,5219537-5219635,
5219746-5219817,5219918-5220491,5220575-5220687,
5220842-5220941,5221059-5221181,5221268-5221335,
5221461-5221610,5221715-5221858,5222097-5222288,
5222710-5222794,5222892-5223043,5223138-5223296,
5223552-5223605,5223698-5223836,5223955-5224088,
5224200-5225117
Length = 1121
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 327 LYSACRWCLWRIPVPFQSHVEDFYIRHIFVLVFGVGYHSW 446
L S CRWCL P Q+++ED + F+ V G SW
Sbjct: 695 LTSHCRWCL--TGTPLQNNLEDLFSLLCFLHVEPWGDASW 732
>01_06_0430 + 29299970-29300031,29300162-29300294,29301057-29301160,
29302201-29302372,29302488-29302628,29302707-29303055,
29303133-29305477
Length = 1101
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 390 PPHGFEKEQVSSINTTDMQNKEQNHVSPHNLP 295
PP G K Q + +NT + KE+N SP P
Sbjct: 1035 PPLGKGKSQEADLNTVSVTGKEENTESPAETP 1066
>08_02_0824 +
21561699-21562415,21563294-21563362,21563424-21563459,
21564533-21564600,21565259-21565277,21565662-21565763,
21566173-21566288,21566501-21566595,21568093-21568264,
21568413-21568493,21569732-21569801,21570106-21570132
Length = 523
Score = 28.3 bits (60), Expect = 8.5
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +3
Query: 570 APQIFRD*CGPPQRNPRILLFP-HWLVVVEEASRNQSQRPYRRRE*SAQ*SYPTFSEEVL 746
A + R PP R L P H EA R + P RRR Q S+PT +
Sbjct: 76 ALEALRGAASPPARRRGGDLHPSHPPEAASEALRGAASPPERRRGGDRQPSHPTEAASEA 135
Query: 747 PNFNAFXPA 773
P+ +A PA
Sbjct: 136 PSGSASPPA 144
>08_02_0640 - 19636968-19638230
Length = 420
Score = 28.3 bits (60), Expect = 8.5
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -2
Query: 489 QPSFIGLVCPKSVRASCDTQPRTQVQKYGEYRSPPHGFE-KEQVSSINTTDMQNKEQNHV 313
Q F+G C K+V AS P Q+ + + +E+ +S+N DM++ E +
Sbjct: 342 QMVFLGRPCSKAVSASQYGMPNDQIFFLDDVMENNKEYSYEEETTSVNVYDMRSAEVS-- 399
Query: 312 SPHNLPW 292
SP + W
Sbjct: 400 SPLPMAW 406
>03_02_0101 -
5623661-5623669,5623756-5624408,5624504-5624640,
5626032-5626609
Length = 458
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 346 GVYGGYLFLFKAMWRTSIFAIFLYLCSGLGITAGAH 453
G GY L+ +W T + A+ L + LG+ G H
Sbjct: 97 GAAAGYQLLWLLLWATVMGALVQLLSARLGVATGKH 132
>02_05_0441 +
29040250-29040524,29040656-29040772,29040834-29041143,
29041863-29042018,29042332-29042483,29042783-29042936,
29043897-29043998,29044168-29044209
Length = 435
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 274 PSAEKRPWKIVWRNVILFFILHVGGVYGG-YLFLFKAMWRTSIFA 405
PS + P + WR ++ FFIL + G++ LFLF + +A
Sbjct: 70 PSQARTP--LTWRLLVSFFILGLTGIFANQLLFLFGLSYTNPTYA 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,552,957
Number of Sequences: 37544
Number of extensions: 632419
Number of successful extensions: 1872
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1872
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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