Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_D03
         (836 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    27   0.24 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   3.0  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   3.0  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   3.0  
DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory pro...    22   6.9  
DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory pro...    22   6.9  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   6.9  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   9.1  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   9.1  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
 Frame = -3

Query: 357 SSGTSYSHCRCTS-TNEFGSRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGYSC-----K 196
           S G  Y  C C S TN     ++ +++       H   +C+D      +G Y+C      
Sbjct: 394 SDGGGYI-CDCPSGTNGTNCEIDTINECDSNPCKHLDAICQDK-----LGDYACYCPPKH 447

Query: 195 WSHQCRVAEDGRPGCMGRSV 136
               C + + G PG +GR+V
Sbjct: 448 TGKNCEIYDRGFPGGLGRAV 467



 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +3

Query: 195 TCSCTHPYTDGTCCPYTALCS 257
           TC C + YT   C  Y   CS
Sbjct: 84  TCHCPYGYTGKDCGEYVDWCS 104


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -3

Query: 369 CSNTSSGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGP 259
           C+  ++ T +SHC+C   +  G    +L+    + GP
Sbjct: 140 CTPNATNTVWSHCQCVLAD--GVERGILTANRMIPGP 174


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -3

Query: 369 CSNTSSGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGP 259
           C+  ++ T +SHC+C   +  G    +L+    + GP
Sbjct: 140 CTPNATNTVWSHCQCVLAD--GVERGILTANRMIPGP 174


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 460 QTRRNPEWRMRTT 422
           QTRRNP +R RT+
Sbjct: 226 QTRRNPYYRPRTS 238


>DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory
           protein 16 protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 108 NGAARDNKEHREG 70
           NG A+ N++H+EG
Sbjct: 70  NGCAKCNEKHKEG 82


>DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory
           protein 9 protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 108 NGAARDNKEHREG 70
           NG A+ N++H+EG
Sbjct: 70  NGCAKCNEKHKEG 82


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 429 EQLLLEGGVPGIAD 388
           EQ+L EGG P + D
Sbjct: 837 EQILAEGGCPNLYD 850


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +2

Query: 203 LYPPIHRWYLLSLHSSLQCGPSRPHRSLRTLTLLPNSLVLVQRQWE*LVP 352
           L P + R  L  L S L  G   P   +    + PN+++L       LVP
Sbjct: 127 LDPVVKRRLLQHLASCLNQGQKEPQVQVIVPEVAPNNIILGNGTGVQLVP 176


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 201 SCTHPYTDGTCCPYTALCSAVLPDHIGH 284
           SC   ++  T C Y+A  SA    H+ H
Sbjct: 137 SCHQGFSSSTWCNYSAYSSA-SRHHVDH 163


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,732
Number of Sequences: 336
Number of extensions: 3371
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23036718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)