Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_D03
         (836 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase su...    77   2e-14
D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase su...    77   2e-14
AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical...    77   2e-14
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    31   1.3  
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    30   1.8  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z81477-7|CAB03927.2|  326|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AL022288-7|CAA18369.1|  326|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr...    29   5.4  
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr...    29   5.4  
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p...    29   5.4  
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p...    29   5.4  
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    29   5.4  
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane...    29   5.4  

>D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 40/70 (57%), Positives = 43/70 (61%)
 Frame = +1

Query: 253 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 432
           A R   TT   KDIDSAAK+                    FG+L+IGYARNPSLKQQLFS
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65

Query: 433 YAILGFALSE 462
           YAILGFALSE
Sbjct: 66  YAILGFALSE 75


>D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 40/70 (57%), Positives = 43/70 (61%)
 Frame = +1

Query: 253 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 432
           A R   TT   KDIDSAAK+                    FG+L+IGYARNPSLKQQLFS
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65

Query: 433 YAILGFALSE 462
           YAILGFALSE
Sbjct: 66  YAILGFALSE 75


>AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.3 protein.
          Length = 116

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 40/70 (57%), Positives = 43/70 (61%)
 Frame = +1

Query: 253 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 432
           A R   TT   KDIDSAAK+                    FG+L+IGYARNPSLKQQLFS
Sbjct: 30  AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 89

Query: 433 YAILGFALSE 462
           YAILGFALSE
Sbjct: 90  YAILGFALSE 99


>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +3

Query: 117  KMLSAARLIAPCSQVCHLLQLCTGATTCSCTHPY-TDGTCC 236
            K +S     + CSQ C     C G TTC C   Y  +G CC
Sbjct: 2137 KCVSIHERASNCSQ-CDANAHCVGGTTCKCNPGYFGNGLCC 2176


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
 Frame = -3

Query: 399  GIADDEGAEDCSNTSSGTSYSH-CRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRYH 223
            G   D+  + CS  S G + S  C C       +    +    G  GP C E CR  RY 
Sbjct: 1534 GFQGDKCEQKCSEGSFGPACSQQCNCGKYKCDATDGKCICP-VGRHGPLCEEECRPGRY- 1591

Query: 222  LCMGGYSCKWSHQC 181
                G SC+   QC
Sbjct: 1592 ----GQSCQNKCQC 1601


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
 Frame = -3

Query: 399  GIADDEGAEDCSNTSSGTSYSH-CRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRYH 223
            G   D+  + CS  S G + S  C C       +    +    G  GP C E CR  RY 
Sbjct: 1534 GFQGDKCEQKCSEGSFGPACSQQCNCGKYKCDATDGKCICP-VGRHGPLCEEECRPGRY- 1591

Query: 222  LCMGGYSCKWSHQC 181
                G SC+   QC
Sbjct: 1592 ----GQSCQNKCQC 1601


>Z81477-7|CAB03927.2|  326|Caenorhabditis elegans Hypothetical
           protein C27C7.4 protein.
          Length = 326

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 6/121 (4%)
 Frame = +3

Query: 141 IAPCSQVCHLLQ---LCTGATTCS-CTHPYTDGTCCPYTALCSAVLPDHIGH*GH*LCCQ 308
           IA C QVCH  +   L  G T+C+ C   +       Y  +C+A     I H     C  
Sbjct: 12  IASC-QVCHSTERTRLYFGITSCAACAAFFRRSDGIRY--MCTATNSCTISHDMKFFCRA 68

Query: 309 IHWCWCSDSGSSWFRSWYWNSLRLPHHRLCQEPLPQAAVVLIRHSGFR--LV*GHGSVLS 482
             +  C  +G    R+    + + P++ + +EP P++   L    GF   L   +G +L 
Sbjct: 69  CRYTSCIRAGMVMSRNALATARKAPNNIIPREPTPRSVPSLEEVDGFSKILNISNGDLLK 128

Query: 483 Y 485
           Y
Sbjct: 129 Y 129


>Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical
           protein T21B6.3 protein.
          Length = 821

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -3

Query: 222 LCMGGYSCKWSHQCRVAEDGRPGCMGRSVWRQTAFCFYNGAARDNKEHREGGDR 61
           LC G   C WS  C  +   +    G+S+  +T  C  +  + D+  H +G DR
Sbjct: 698 LCEGQSCCNWSEWCHWSMCDKECGGGQSI--RTRTCLNSAGSPDSSCHCDGPDR 749


>AL022288-7|CAA18369.1|  326|Caenorhabditis elegans Hypothetical
           protein ZK1025.10 protein.
          Length = 326

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 6/121 (4%)
 Frame = +3

Query: 141 IAPCSQVCHLLQ---LCTGATTCS-CTHPYTDGTCCPYTALCSAVLPDHIGH*GH*LCCQ 308
           IA C QVCH  +   L  G T+C+ C   +       Y  +C+A     I H     C  
Sbjct: 12  IASC-QVCHSTERTRLYFGITSCAACAAFFRRSDGIRY--MCTATNSCTISHDMKFFCRA 68

Query: 309 IHWCWCSDSGSSWFRSWYWNSLRLPHHRLCQEPLPQAAVVLIRHSGFR--LV*GHGSVLS 482
             +  C  +G    R+    + + P++ + +EP P++   L    GF   L   +G +L 
Sbjct: 69  CRYTSCIRAGMVMSRNALATARKAPNNIIPREPTPRSVPSLEEVDGFSKILNISNGDLLK 128

Query: 483 Y 485
           Y
Sbjct: 129 Y 129


>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
            K08E5.3b protein.
          Length = 3183

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +3

Query: 150  CSQVCHLLQLCTGATTCSCTHPYTDGTCCPYTALCSAVLPD 272
            CS V H +    G T C C   Y DG       +C A+L D
Sbjct: 2755 CSGVAHCIDRAVGYT-CKCPDGYIDGNPDEPGRVCGALLCD 2794


>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
            K08E5.3a protein.
          Length = 3767

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +3

Query: 150  CSQVCHLLQLCTGATTCSCTHPYTDGTCCPYTALCSAVLPD 272
            CS V H +    G T C C   Y DG       +C A+L D
Sbjct: 3339 CSGVAHCIDRAVGYT-CKCPDGYIDGNPDEPGRVCGALLCD 3378


>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
            protein K08E5.3b protein.
          Length = 3183

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +3

Query: 150  CSQVCHLLQLCTGATTCSCTHPYTDGTCCPYTALCSAVLPD 272
            CS V H +    G T C C   Y DG       +C A+L D
Sbjct: 2755 CSGVAHCIDRAVGYT-CKCPDGYIDGNPDEPGRVCGALLCD 2794


>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
            protein K08E5.3a protein.
          Length = 3767

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +3

Query: 150  CSQVCHLLQLCTGATTCSCTHPYTDGTCCPYTALCSAVLPD 272
            CS V H +    G T C C   Y DG       +C A+L D
Sbjct: 3339 CSGVAHCIDRAVGYT-CKCPDGYIDGNPDEPGRVCGALLCD 3378


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
            x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
 Frame = +3

Query: 117  KMLSAARLIAPCSQVCHLLQLCTGATTC---SCT----HPYTDGTCCPYTALCSAV 263
            K  SA    AP    C + + CTG  TC    CT    H   DG C P  A  S V
Sbjct: 1428 KQKSAPAFAAP-GDTCSMREKCTGGATCFEGMCTCDDHHFAEDGYCRPIEARSSKV 1482


>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
            adhesion receptorMUA-3 precursor protein.
          Length = 3767

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +3

Query: 150  CSQVCHLLQLCTGATTCSCTHPYTDGTCCPYTALCSAVLPD 272
            CS V H +    G T C C   Y DG       +C A+L D
Sbjct: 3339 CSGVAHCIDRAVGYT-CKCPDGYIDGNPDEPGRVCGALLCD 3378


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,865,359
Number of Sequences: 27780
Number of extensions: 313067
Number of successful extensions: 1155
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)