Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_D02
         (963 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46787-10|CAA86749.1|  154|Caenorhabditis elegans Hypothetical p...    31   1.2  
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    28   8.6  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>Z46787-10|CAA86749.1|  154|Caenorhabditis elegans Hypothetical
           protein C16C10.11 protein.
          Length = 154

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 20/40 (50%), Positives = 22/40 (55%)
 Frame = -2

Query: 761 TAGGVTVXSAXGXMAGSAXTGMFSGGGXSXPAXQQQAGXA 642
           TAGGV + SA G   G    GMF+GGG S  A Q  A  A
Sbjct: 70  TAGGVAIGSAVGHAVG----GMFTGGGSSH-AEQAPAAAA 104


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = -2

Query: 848 PPAXXPIXXGVLTGKQSXLSSXGIXXXGXTAGGVTVXSAXGXMAGSAXTGM-FSGGGXSX 672
           P A      G  +G +S  S+        ++GG    S  G  AGSA  G  +SGGG + 
Sbjct: 566 PEAAPAAPSGGYSGSES--SAPAAPEPAPSSGGY---SGGGGDAGSAAGGSNYSGGGETA 620

Query: 671 PAXQQQAGXAGXTYN 627
           PA    A     TY+
Sbjct: 621 PAAPPPAPEPAQTYS 635


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = -2

Query: 848 PPAXXPIXXGVLTGKQSXLSSXGIXXXGXTAGGVTVXSAXGXMAGSAXTGM-FSGGGXSX 672
           P A      G  +G +S  S+        ++GG    S  G  AGSA  G  +SGGG + 
Sbjct: 566 PEAAPAAPSGGYSGSES--SAPAAPEPAPSSGGY---SGGGGDAGSAAGGSNYSGGGETA 620

Query: 671 PAXQQQAGXAGXTYN 627
           PA    A     TY+
Sbjct: 621 PAAPPPAPEPAQTYS 635


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,924,710
Number of Sequences: 27780
Number of extensions: 64334
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2490012644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)