Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_C24
         (919 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce...    32   0.13 
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    28   2.1  
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    28   2.1  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    27   2.8  
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    27   4.9  
SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr...    26   8.6  

>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +3

Query: 654 MYEDELIPLFERCGTIWDLRLMMDPMTGAN 743
           M EDEL  +F + GT+  +R+M +P+T A+
Sbjct: 112 MQEDELQQIFSKFGTVTHVRIMREPVTKAS 141


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 660 EDELIPLFERCGTIWDLRLMMDPMTG 737
           ED+L   F  CG I  +RL  DP +G
Sbjct: 379 EDDLSTAFGGCGDIQSIRLPTDPQSG 404


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 290 ELDERALDALKEFPSDGALSVLGQFLDS-NLEHVSNKS 400
           EL+E  LDAL++   D A SVL +   S N E +   S
Sbjct: 259 ELNEEQLDALRKKDKDTAASVLAELFGSENTEEIDTVS 296


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 295 GRACSRCLKRISIRRC 342
           GR CS CLKR +I+ C
Sbjct: 36  GRPCSNCLKRSTIQSC 51


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 651 DMYEDELIPLFERCGTIWDLRLMMDPMTGA 740
           D+ E ++  +F + G +   +L++DP TG+
Sbjct: 17  DVSEQQMTEIFNQVGPVKTFKLVLDPETGS 46


>SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 167 LPHHRIFLHCPPPFY 123
           LP+ R+FLHC P  Y
Sbjct: 8   LPNQRVFLHCYPSEY 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,968,744
Number of Sequences: 5004
Number of extensions: 55125
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)