Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_C24
         (919 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL137227-1|CAB70238.2|  611|Caenorhabditis elegans Hypothetical ...    85   9e-17
Z81035-3|CAB02732.1|  333|Caenorhabditis elegans Hypothetical pr...    32   0.66 
Z93384-1|CAB07633.3|  342|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z97628-3|CAB10727.1|  819|Caenorhabditis elegans Hypothetical pr...    29   6.2  
Z79755-13|CAB02114.1|  819|Caenorhabditis elegans Hypothetical p...    29   6.2  

>AL137227-1|CAB70238.2|  611|Caenorhabditis elegans Hypothetical
           protein F58D5.1 protein.
          Length = 611

 Score = 84.6 bits (200), Expect = 9e-17
 Identities = 44/132 (33%), Positives = 76/132 (57%)
 Frame = +2

Query: 179 SDVGRTEDYHKLIEYGLDPKVAAKLDDIYKTGKLAHAELDERALDALKEFPSDGALSVLG 358
           S    TE+Y KLI   + P +A  + +IY++G L   +LD+RA+D +     D A  +  
Sbjct: 52  SKYAETENYKKLIGLKMKPALADVVCEIYESGLLGPEDLDDRAVDIINSVNLDQAKFIFT 111

Query: 359 QFLDSNLEHVSNKSAFLCGVMKTYRQKSRAGVPGAPALTPTVQVKGPDEEKIKQILARTG 538
           +  +S L  V+ KS ++  ++++++ + R    GA A+T    + GP+   +K +L  TG
Sbjct: 112 EIKNSELFGVATKSLYVTSLIRSFKDRCRQ--QGAAAVTSGKLINGPELAALKNLLETTG 169

Query: 539 YTLDVTTGQRKY 574
           YT++VT GQRK+
Sbjct: 170 YTIEVTIGQRKF 181



 Score = 56.0 bits (129), Expect = 4e-08
 Identities = 22/31 (70%), Positives = 28/31 (90%)
 Frame = +3

Query: 651 DMYEDELIPLFERCGTIWDLRLMMDPMTGAN 743
           D++ED L+PLFE+ G IWDLRLMMDPM+GA+
Sbjct: 210 DVFEDTLVPLFEKSGKIWDLRLMMDPMSGAS 240


>Z81035-3|CAB02732.1|  333|Caenorhabditis elegans Hypothetical
           protein C15H11.4 protein.
          Length = 333

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +2

Query: 374 NLEHVSNKSAFLCGVMKTYRQKSRAGVPGAPALTPTVQVKGPDEEKIKQI 523
           NL  V +K +F  G+MK+YRQ   A V  A ALT  ++  G +   +  +
Sbjct: 194 NLATVDDKKSF--GMMKSYRQSKLANVMHARALTKELRKDGAEHVTVNSL 241


>Z93384-1|CAB07633.3|  342|Caenorhabditis elegans Hypothetical
           protein H08M01.1 protein.
          Length = 342

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 298 RACSRCLKRISIRRCFKCSWTIFR 369
           + C +CLK I   +CF+  WT+FR
Sbjct: 286 KVCPKCLKMIGCAKCFRW-WTVFR 308


>Z97628-3|CAB10727.1|  819|Caenorhabditis elegans Hypothetical
           protein F43G9.12 protein.
          Length = 819

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
 Frame = +2

Query: 149 ISYDEVAGKDSDVGRTEDYHKLIEYGLDPKVAAKLDDIYKTGKLAHAELD----ERALDA 316
           +S+D   G DS     +D  K+ E     K+  + + +YK  K+    LD    +  L  
Sbjct: 45  MSFDADEGADSTFKLKKDKKKVEELKRQHKLEEEAEKLYKEEKIRKEALDKIVKKEKLSK 104

Query: 317 LKEFPSDGALSVLGQFLDSNLEHVSNKSAF 406
             +   +     L ++ D + +H+SN  ++
Sbjct: 105 EDKKTKNERHKYLDKYRDKSAKHISNSESY 134


>Z79755-13|CAB02114.1|  819|Caenorhabditis elegans Hypothetical
           protein F43G9.12 protein.
          Length = 819

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
 Frame = +2

Query: 149 ISYDEVAGKDSDVGRTEDYHKLIEYGLDPKVAAKLDDIYKTGKLAHAELD----ERALDA 316
           +S+D   G DS     +D  K+ E     K+  + + +YK  K+    LD    +  L  
Sbjct: 45  MSFDADEGADSTFKLKKDKKKVEELKRQHKLEEEAEKLYKEEKIRKEALDKIVKKEKLSK 104

Query: 317 LKEFPSDGALSVLGQFLDSNLEHVSNKSAF 406
             +   +     L ++ D + +H+SN  ++
Sbjct: 105 EDKKTKNERHKYLDKYRDKSAKHISNSESY 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,982,864
Number of Sequences: 27780
Number of extensions: 338281
Number of successful extensions: 944
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)