Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_C22
         (872 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844...    37   0.024
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855     35   0.098
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865...    29   4.9  
01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242           29   6.4  

>04_04_0407 -
           24983491-24983575,24983655-24984015,24984367-24984406,
           24984466-24984468
          Length = 162

 Score = 36.7 bits (81), Expect = 0.024
 Identities = 19/42 (45%), Positives = 23/42 (54%)
 Frame = +1

Query: 709 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPRRLNLLGTXKYP 834
           +ALKA + V  G   K  +KIR SV F RP+ L      KYP
Sbjct: 26  QALKAAKAVKSGTAKKTTKKIRTSVTFHRPKTLKKSRDPKYP 67


>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
          Length = 152

 Score = 34.7 bits (76), Expect = 0.098
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +1

Query: 709 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPRRLNLLGTXKYP 834
           +ALK  + V  G   ++ +KIR SV F RP+ L      KYP
Sbjct: 16  QALKVAKAVKSGSIKRKSKKIRTSVTFHRPKTLKKARDPKYP 57


>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
            30286718-30287042,30287563-30287818,30287901-30288117,
            30288743-30289095,30289330-30289833,30291267-30292467,
            30292614-30292970,30293258-30293495,30294083-30295125,
            30295234-30296649,30296731-30296855,30297036-30297314,
            30297352-30297382,30298957-30299022,30299447-30299689,
            30299848-30299898,30299980-30300071,30300182-30300249,
            30300515-30300600,30300720-30300824,30300994-30301127,
            30302403-30302436,30302620-30302892,30303019-30303288,
            30303384-30303974,30304065-30304214
          Length = 3376

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 733  VVKGEHGKRVRKIRNSVH-FRRPRRLNLL 816
            ++  +HGKR+  I N VH F  P R+N +
Sbjct: 2663 ILTSQHGKRIAVIENEVHDFSMPDRVNAI 2691


>01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242
          Length = 417

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 206 VSQNTGTCPESSCACPETSC 265
           ++++  TCP + C CPE  C
Sbjct: 116 ITEHEKTCPHAPCFCPEPGC 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,721,391
Number of Sequences: 37544
Number of extensions: 185505
Number of successful extensions: 463
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)