Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_C22
         (872 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal prote...    45   8e-05
Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical pr...    40   0.003
Z69793-8|CAA93674.2|  354|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AL008867-3|CAC14271.1|  354|Caenorhabditis elegans Hypothetical ...    29   3.3  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   5.7  

>U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 25.1 protein.
          Length = 147

 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 21/44 (47%), Positives = 28/44 (63%)
 Frame = +1

Query: 709 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPRRLNLLGTXKYPXK 840
           KAL A++KVVKG+     R++R SVHFRRP  L      ++P K
Sbjct: 11  KALDAKKKVVKGKRTTHRRQVRTSVHFRRPVTLKTARQARFPRK 54


>Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical
           protein F52B5.6 protein.
          Length = 146

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = +1

Query: 703 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPRRLNLLGTXKYPXK 840
           V KA++A++ VVKG      + +R SVHFRRP+ L      +Y  K
Sbjct: 8   VGKAIQAKKAVVKGSKTNVRKNVRTSVHFRRPKTLVTARAPRYARK 53


>Z69793-8|CAA93674.2|  354|Caenorhabditis elegans Hypothetical
           protein R03A10.6 protein.
          Length = 354

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
 Frame = -1

Query: 830 YLXVPRRFKRLGLRKCTELRIFRTLFPCSPFTTFL*ALSA----LVTGFTTFFCPLIPVF 663
           YL  P  +  L +   TEL    T   C P+ T+   LS     L TG  +F+C +IP  
Sbjct: 58  YLRTPTNYVLLAMA-VTELL---TGLSCLPWFTYYYTLSGYKNDLQTGLPSFWCDMIPYM 113

Query: 662 LGF-GAIFNFGNCWL 621
             F  +IF+    WL
Sbjct: 114 AAFLPSIFHTMAIWL 128


>AL008867-3|CAC14271.1|  354|Caenorhabditis elegans Hypothetical
           protein R03A10.6 protein.
          Length = 354

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
 Frame = -1

Query: 830 YLXVPRRFKRLGLRKCTELRIFRTLFPCSPFTTFL*ALSA----LVTGFTTFFCPLIPVF 663
           YL  P  +  L +   TEL    T   C P+ T+   LS     L TG  +F+C +IP  
Sbjct: 58  YLRTPTNYVLLAMA-VTELL---TGLSCLPWFTYYYTLSGYKNDLQTGLPSFWCDMIPYM 113

Query: 662 LGF-GAIFNFGNCWL 621
             F  +IF+    WL
Sbjct: 114 AAFLPSIFHTMAIWL 128


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 762  YSLPMFTFYNLPLSLKCFSNRFHYFF 685
            +S  +  FYNL L  KCFS  FH+ F
Sbjct: 3293 FSKKVTFFYNL-LQSKCFSKHFHWLF 3317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,555,036
Number of Sequences: 27780
Number of extensions: 163358
Number of successful extensions: 505
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)