Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_C21
         (1280 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   0.23 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.60 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    29   1.4  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.2  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   9.7  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   9.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect(2) = 0.23
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 921 PXPPPPPPP 895
           P PPPPPPP
Sbjct: 775 PPPPPPPPP 783



 Score = 23.8 bits (49), Expect(2) = 0.23
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 1056 GGGXXAPXPPPPPP 1015
            G     P PPPPPP
Sbjct: 769  GVAGAGPPPPPPPP 782


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.60
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +2

Query: 476 PPPPPXXXXXXXKKXPPPPXXGXXXPXKKK 565
           PPPPP        + PPPP  G     K K
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKKRKNK 39



 Score = 23.8 bits (49), Expect(2) = 4.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 915 PPPPPPP 895
           PPPPPPP
Sbjct: 24  PPPPPPP 30



 Score = 23.4 bits (48), Expect(2) = 2.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 1038 PXPPPPPP 1015
            P PPPPPP
Sbjct: 9    PPPPPPPP 16



 Score = 23.0 bits (47), Expect(2) = 2.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 921 PXPPPPPPP 895
           P  PPPPPP
Sbjct: 21  PSQPPPPPP 29



 Score = 21.4 bits (43), Expect(2) = 4.8
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -3

Query: 1050 GXXAPXPPPPPP 1015
            G   P  PPPPP
Sbjct: 17   GFEPPSQPPPPP 28


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/49 (30%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
 Frame = -3

Query: 1038 PXPPPPPPXXXXXXXXXXG-GGGXXXFXXXXXXXXXXXXXPXPPPPPPP 895
            P PPPPPP                                P PPPPPPP
Sbjct: 905  PTPPPPPPLPVKTSLNTFSHPDSVNIVANDTSVAGVMPAFPPPPPPPPP 953



 Score = 26.2 bits (55), Expect = 9.7
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 922 PXPPPPPPP 896
           P PPPPPPP
Sbjct: 945 PPPPPPPPP 953


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -1

Query: 533 GGGGGXFXGGXKXKXGGGGGF 471
           GGG G F GG     GG GGF
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGF 247



 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -1

Query: 533 GGGGGXFXGGXKXKXGGGGGF 471
           GGG G F GG     GG GGF
Sbjct: 241 GGGPGGFGGGLGGFGGGPGGF 261


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 921 PXPPPPPPP 895
           P PPPPPPP
Sbjct: 306 PPPPPPPPP 314


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 922 PXPPPPPPP 896
           P PPPPPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 26.2 bits (55), Expect = 9.7
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 921 PXPPPPPPP 895
           P PPPPPPP
Sbjct: 236 PAPPPPPPP 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.153    0.522 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,099,961
Number of Sequences: 5004
Number of extensions: 24648
Number of successful extensions: 349
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 697499478
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)