Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_C20
         (913 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99709-10|CAB16856.1|  448|Caenorhabditis elegans Hypothetical p...    29   3.5  
Z81070-8|CAB03001.1|  449|Caenorhabditis elegans Hypothetical pr...    29   3.5  
D16439-1|BAA03909.1|  449|Caenorhabditis elegans alpha-1 tubulin...    29   3.5  
D14965-1|BAA03610.1|  448|Caenorhabditis elegans alpha-2 tubulin...    29   3.5  

>Z99709-10|CAB16856.1|  448|Caenorhabditis elegans Hypothetical
           protein C47B2.3 protein.
          Length = 448

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 120 SCLDPINPXLKGDPRHXXYQQSLNXYR 40
           SC +P N  +K DPRH  Y      YR
Sbjct: 292 SCFEPANQMVKCDPRHGKYMAVCLLYR 318


>Z81070-8|CAB03001.1|  449|Caenorhabditis elegans Hypothetical
           protein F26E4.8 protein.
          Length = 449

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 120 SCLDPINPXLKGDPRHXXYQQSLNXYR 40
           SC +P N  +K DPRH  Y      YR
Sbjct: 292 SCFEPANQMVKCDPRHGKYMAVCLLYR 318


>D16439-1|BAA03909.1|  449|Caenorhabditis elegans alpha-1 tubulin
           protein.
          Length = 449

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 120 SCLDPINPXLKGDPRHXXYQQSLNXYR 40
           SC +P N  +K DPRH  Y      YR
Sbjct: 292 SCFEPANQMVKCDPRHGKYMAVCLLYR 318


>D14965-1|BAA03610.1|  448|Caenorhabditis elegans alpha-2 tubulin
           protein.
          Length = 448

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 120 SCLDPINPXLKGDPRHXXYQQSLNXYR 40
           SC +P N  +K DPRH  Y      YR
Sbjct: 292 SCFEPANQMVKCDPRHGKYMAVCLLYR 318


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,862,327
Number of Sequences: 27780
Number of extensions: 275614
Number of successful extensions: 776
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)