Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_C17
         (966 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1E467 Cluster: Putative uncharacterized protein; n=1; ...    38   0.51 
UniRef50_UPI0000DB6D8C Cluster: PREDICTED: similar to sine oculi...    34   6.3  
UniRef50_Q0RDE0 Cluster: Putative uncharacterized protein; n=1; ...    33   8.3  

>UniRef50_Q1E467 Cluster: Putative uncharacterized protein; n=1;
            Coccidioides immitis|Rep: Putative uncharacterized
            protein - Coccidioides immitis
          Length = 1705

 Score = 37.5 bits (83), Expect = 0.51
 Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 1/92 (1%)
 Frame = +3

Query: 534  ESRAIPQERTCDQKAXKXPGTAKRPPLXAFFXVXPPPXXSIXXIXXHXXGGEXPDXTIKI 713
            +S   P++    Q+    P     PPL  F    PPP   +        GG  P     +
Sbjct: 962  DSSPAPEKPAAKQEGFNGPPPPPPPPLPGFSGPPPPPPPPLPGF----SGGPPPPPPPPL 1017

Query: 714  PGVSPL*XSPXPXPWXRP-XPXPXIPGGPFXP 806
            PG S    +P P P   P  P P  PG P  P
Sbjct: 1018 PGFSG--GAPPPPPPPMPGAPIPPPPGAPPLP 1047


>UniRef50_UPI0000DB6D8C Cluster: PREDICTED: similar to sine oculis
           homeobox homolog 3a; n=1; Apis mellifera|Rep: PREDICTED:
           similar to sine oculis homeobox homolog 3a - Apis
           mellifera
          Length = 475

 Score = 33.9 bits (74), Expect = 6.3
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +3

Query: 681 GGEXPDXTIKIPGVSPL*XSPXPXPWXRPXPXPXIPGGPFXP 806
           G +  D  I + G SP   S  P P  +P P P  P GP  P
Sbjct: 238 GSDSEDSDISLGGTSPASPSSSPPPTHQPSPVPLGPLGPLPP 279


>UniRef50_Q0RDE0 Cluster: Putative uncharacterized protein; n=1;
           Frankia alni ACN14a|Rep: Putative uncharacterized
           protein - Frankia alni (strain ACN14a)
          Length = 61

 Score = 33.5 bits (73), Expect = 8.3
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +3

Query: 714 PGVSPL*XSPXPXPWXR---PXPXPXIPGGPFXP 806
           P VS +  SP P PW R   P P P +PG P  P
Sbjct: 28  PTVSAVCASPAPSPWTRSRPPRPRPRVPGPPQPP 61


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 466,139,150
Number of Sequences: 1657284
Number of extensions: 5973079
Number of successful extensions: 11802
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11530
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 89815291940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)