Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_C17
         (966 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0381 - 5061901-5061914,5062044-5062100,5062268-5063231           31   1.8  

>04_01_0381 - 5061901-5061914,5062044-5062100,5062268-5063231
          Length = 344

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 24/77 (31%), Positives = 28/77 (36%), Gaps = 4/77 (5%)
 Frame = +3

Query: 588 PGTAKRPPLXAFFXVXPPPXXSIXXIXXHXXGGEXPDXTIKIPGVSPL*XSP----XPXP 755
           PG    PPL        PP   +  I         P   I+IPG+ PL   P       P
Sbjct: 71  PGLPPLPPLPTIQIPGLPPLPQLPTIQIPGLPPLQPLPAIQIPGLPPLPQLPTIQIPGLP 130

Query: 756 WXRPXPXPXIPGGPFXP 806
             +P P   IPG P  P
Sbjct: 131 TLQPLPTIQIPGLPPLP 147



 Score = 29.5 bits (63), Expect = 4.2
 Identities = 24/74 (32%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
 Frame = +3

Query: 588 PGTAKRPPLXAFFXVXPPPXXSIXXIXXHXXGGEXPDXTIKIPGVSPL*XSP----XPXP 755
           PG     PL A      PP   +  I         P  TI+IPG+ PL   P       P
Sbjct: 99  PGLPPLQPLPAIQIPGLPPLPQLPTIQIPGLPTLQPLPTIQIPGLPPLPQLPTIQIPGLP 158

Query: 756 WXRPXPXPXIPGGP 797
             +P P   IPG P
Sbjct: 159 PLQPLPAIQIPGLP 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,032,990
Number of Sequences: 37544
Number of extensions: 197313
Number of successful extensions: 406
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2799822860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)