Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_C16
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    36   0.006
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    27   2.6  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.6  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   4.6  
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce...    26   8.0  

>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 20/56 (35%), Positives = 30/56 (53%)
 Frame = +2

Query: 167 LEFYLNARHTHKQLLTVYNPYDFSVNFKVLCTSPNKFTVIDPEGVIAPQSCIDIVV 334
           L FY       K+L++V+NP    V FKV  T+P  + V    G I P+S +++ V
Sbjct: 9   LFFYPPFTTMSKELISVHNPNPEPVIFKVKTTAPKHYCVRPNSGKIEPKSTVNVQV 64


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 159 GNTNTGKFFIFHRKFTLLFSQENNKPICIMYVISTNQI 46
           G+TN   F  FH KF ++ S   +  + I + +S + I
Sbjct: 226 GHTNNVSFAFFHSKFPIIISGSEDGTVKIWHTLSYSLI 263


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -3

Query: 176 KILRKQEIQTLENFSYFIESLLYYFLRKTISQYV 75
           +I+     QTL   S  + S L+Y++  T++ Y+
Sbjct: 340 RIIAPSAFQTLSLSSVMVTSFLHYYIMSTVTYYI 373


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 841 LFNIQVYFCITHIFKAVHIII*IYGLKTSMLTRPSTNE 728
           LF++   FCI++IF    ++  IYG   S  T+ S N+
Sbjct: 6   LFSLICVFCISNIFTQAFLVHQIYG--NSSFTKISLNQ 41


>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 393

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +3

Query: 279 QSSTQRV*SLHKAVLILSYVTHNHLFHIATQ*KNSE*LCLTEILSRLWEKETFQPN 446
           Q ST+   +L    L   Y+  ++LF    Q   +  L +  I++ LW K    PN
Sbjct: 218 QDSTEYFDALTPDSLRPLYILSSYLFQFGDQFSEAFLLDVCSIITALWLKSVVDPN 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,663,562
Number of Sequences: 5004
Number of extensions: 80090
Number of successful extensions: 167
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)