Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_C16
         (868 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0103 - 25847224-25847331,25847785-25847862,25848487-258485...    38   0.014
04_04_0742 + 27706150-27706198,27706306-27706376,27706490-277065...    34   0.13 
08_01_0361 + 3165516-3165564,3166316-3166386,3166481-3166562,316...    30   2.8  
01_06_1215 - 35473524-35473988,35474571-35475386                       29   3.6  
05_03_0234 - 10712818-10712907,10714370-10714558,10715678-10716559     29   6.4  

>02_05_0103 -
           25847224-25847331,25847785-25847862,25848487-25848528,
           25848641-25848763,25848856-25848971,25849062-25849143,
           25849233-25849303,25849632-25849689
          Length = 225

 Score = 37.5 bits (83), Expect = 0.014
 Identities = 30/113 (26%), Positives = 47/113 (41%)
 Frame = +2

Query: 143 PVFVFPVSLEFYLNARHTHKQLLTVYNPYDFSVNFKVLCTSPNKFTVIDPEGVIAPQSCI 322
           P  +FP  L+  ++        L + N  D  V FKV  TSP K+ V    G++APQS  
Sbjct: 14  PELIFPFELKKQISCS------LHLTNKTDEYVTFKVKTTSPKKYCVRPNNGIVAPQSTS 67

Query: 323 DIVVRYTQPSVSHCDTIEKFRITMFDRNTQQALGKRDIPTKLIEGEPSSTNQE 481
           +++V       +  D   K +  +      Q L  +DI   +   E  +   E
Sbjct: 68  NVLVTMQAQREAPPDMQCKDKFLVQSAIVTQELTPKDITGDMFTKESGNVVDE 120


>04_04_0742 +
           27706150-27706198,27706306-27706376,27706490-27706571,
           27706695-27706810,27706899-27707075,27707148-27707195,
           27707786-27707863,27708724-27708837
          Length = 244

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 21/73 (28%), Positives = 33/73 (45%)
 Frame = +2

Query: 131 MKNFPVFVFPVSLEFYLNARHTHKQLLTVYNPYDFSVNFKVLCTSPNKFTVIDPEGVIAP 310
           M N  + V P  L+     +      + + N  +  V FKV  T+P K++V    G++ P
Sbjct: 1   MSNTLLRVHPSELKIPYEYKRKRSCCMQLTNKTNQYVAFKVKTTNPRKYSVRHACGILPP 60

Query: 311 QSCIDIVVRYTQP 349
           +S  DI V    P
Sbjct: 61  RSSCDITVTMQAP 73


>08_01_0361 +
           3165516-3165564,3166316-3166386,3166481-3166562,
           3166677-3166792,3166892-3167053,3167158-3167202,
           3168097-3168174,3168632-3168742
          Length = 237

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = +2

Query: 158 PVSLEFYLNARHTHKQLLTVYNPYDFSVNFKVLCTSPNKFTVIDPEGVIAPQSCIDIVV 334
           P  L F           + + N  D  V FKV  T+P ++ V    GV+ P S  D+ V
Sbjct: 10  PSELSFPFELLKQSSCSMQLTNKTDHYVAFKVKTTNPKQYCVRPNIGVVLPGSTCDVTV 68


>01_06_1215 - 35473524-35473988,35474571-35475386
          Length = 426

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = +2

Query: 161 VSLEFYLNARHTHKQLLTVYNPYDFSVNFKVLCTSPNKFTVIDPEGVIAPQSCIDIVV 334
           V ++F  NA+      L   +P    V FKV  +SP KF V  P G + P S   + V
Sbjct: 43  VVIDFKPNAKCRADLRLRSLHP-SLPVAFKVQTSSPLKFLVSPPRGAVQPLSSASLRV 99


>05_03_0234 - 10712818-10712907,10714370-10714558,10715678-10716559
          Length = 386

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
 Frame = -2

Query: 510 AIG*KFSPKLSWFVLDGSPSISLVGMSLFPRA---C*VFLSNIVILNFSIVSQCETDGCV 340
           A+   F+P  SW +L  S   SL+     PR    C  F + ++ L+ ++  Q  T+G  
Sbjct: 128 AVNYLFAPWASWLLLLQSAPSSLLSPGAAPRRVLWC-AFAAPVLALDVTVYGQWFTEG-- 184

Query: 339 *RTTISIQLCGAITPSGSMTV 277
            RT +S+    A  P+G +TV
Sbjct: 185 -RTALSM----AANPTGHITV 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,835,673
Number of Sequences: 37544
Number of extensions: 452182
Number of successful extensions: 955
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)