Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_C16
         (868 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.6  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    22   6.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   8.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   8.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   8.4  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   8.4  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    22   8.4  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
 Frame = +2

Query: 503 PIASRAAPIRPTEDHTKISCN--HTGHH 580
           P  + A P  PTE+     CN  H  HH
Sbjct: 448 PATTAAPPQLPTEESVDALCNTLHHWHH 475


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 696 LHIGANLKLVFSFVLGLVSMLV 761
           L +G  L L+F+ VLGL  ++V
Sbjct: 128 LFVGMILILIFAEVLGLYGLIV 149


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 722 SLLICARPCEHACFETIDSNYNMYS 796
           ++ +  +PC   C  T D+ Y +YS
Sbjct: 227 TIFVPVKPCPWICELTNDAGYVVYS 251


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 775 IYGLKTSMLTRPST 734
           IY L T+++TRP T
Sbjct: 141 IYSLYTAVITRPDT 154


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 775 IYGLKTSMLTRPST 734
           IY L T+++TRP T
Sbjct: 141 IYSLYTAVITRPDT 154


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -3

Query: 833 YSSLFLYNPYF*GCTYYNLNLW 768
           +  +F+ +P+F G T   +N W
Sbjct: 49  FRCVFVLDPWFAGSTNIGINKW 70


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 606 PCLLVDAPLWCPV*LHEIFV*SSVGLI 526
           PC+L   PLW    +  + +  +V +I
Sbjct: 38  PCILKPKPLWTGKQISSLIIPGNVNMI 64


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 752 HACFETIDSNYNMYSLKNMG 811
           H+CF+T+D  Y +    N G
Sbjct: 51  HSCFQTMDRLYFVMEYVNGG 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,587
Number of Sequences: 438
Number of extensions: 5537
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)