Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_C14
(1018 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 33 0.049
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.064
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 30 0.60
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.60
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 29 0.79
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.79
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.4
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 3.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 5.6
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 9.8
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 33.5 bits (73), Expect = 0.049
Identities = 20/61 (32%), Positives = 21/61 (34%)
Frame = +1
Query: 589 PPXRPXXRXXGXXXRGVXPXRXPPPXXRAXPGGPXAPXXPPXXXPPPXPSXXSXPGXPPX 768
PP RP P PP P P P PP PPP P+ S P P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPP--PPMSVPPPPSAPPMPAGPPSAPPPPLPA-SSAPSVPNP 1746
Query: 769 G 771
G
Sbjct: 1747 G 1747
Score = 29.5 bits (63), Expect = 0.79
Identities = 19/65 (29%), Positives = 19/65 (29%), Gaps = 2/65 (3%)
Frame = +1
Query: 643 PXRXPP--PXXRAXPGGPXAPXXPPXXXPPPXPSXXSXPGXPPXGASPLXXPXRXPPXXX 816
P PP P A P PP PP PS P PP P P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPN 1745
Query: 817 PXXXS 831
P S
Sbjct: 1746 PGDRS 1750
Score = 28.7 bits (61), Expect = 1.4
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +3
Query: 720 PPPXAXXXXPPRXPPXXXLPPXXPXPXPAP 809
PPP PP PP PP P P P P
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAP-PPPLP 1736
Score = 27.5 bits (58), Expect = 3.2
Identities = 15/47 (31%), Positives = 16/47 (34%)
Frame = +1
Query: 637 VXPXRXPPPXXRAXPGGPXAPXXPPXXXPPPXPSXXSXPGXPPXGAS 777
V P PP A P PP PP P+ PP AS
Sbjct: 1692 VRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPAS 1738
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.1 bits (72), Expect = 0.064
Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Frame = +1
Query: 643 PXRXPP-PXXRAXPGGPXAPXXPPXXXPPPXPSXXSX-PGXP-PXGASPLXXPXRXPPXX 813
P PP P + P P + P PPP P+ S P P P GA P+ P PP
Sbjct: 1037 PSTAPPVPIPTSTPPVPKSSSGAPSA-PPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVP 1095
Query: 814 XP 819
P
Sbjct: 1096 KP 1097
Score = 31.5 bits (68), Expect = 0.20
Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Frame = +1
Query: 658 PPXXRAXPGGPXAPXXPPXXXPPPXPSXXSXPGXPPXGASPLXXP-XRXPPXXXP 819
PP + P P P P P PS + P P GA P+ P PP P
Sbjct: 1121 PPVPKPSVAAPPVPV-PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAP 1174
Score = 31.5 bits (68), Expect = 0.20
Identities = 17/59 (28%), Positives = 18/59 (30%)
Frame = +1
Query: 643 PXRXPPPXXRAXPGGPXAPXXPPXXXPPPXPSXXSXPGXPPXGASPLXXPXRXPPXXXP 819
P PP G P P P P PS P G P+ P PP P
Sbjct: 1164 PSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222
Score = 30.3 bits (65), Expect = 0.45
Identities = 17/54 (31%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Frame = +1
Query: 661 PXXRAXPGGPXAPXXPPXXXPPPXPSXXSXP-GXPPXGASPLXXPXRXPPXXXP 819
P A G P P P P PS P P G P+ P PP P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKP 1203
Score = 29.9 bits (64), Expect = 0.60
Identities = 16/53 (30%), Positives = 17/53 (32%)
Frame = +1
Query: 661 PXXRAXPGGPXAPXXPPXXXPPPXPSXXSXPGXPPXGASPLXXPXRXPPXXXP 819
P A G P P P P PS P A P+ P PP P
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKP 1164
Score = 29.9 bits (64), Expect = 0.60
Identities = 15/54 (27%), Positives = 18/54 (33%)
Frame = +1
Query: 658 PPXXRAXPGGPXAPXXPPXXXPPPXPSXXSXPGXPPXGASPLXXPXRXPPXXXP 819
PP + P P P P P+ P PP A P+ P P P
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212
Score = 29.5 bits (63), Expect = 0.79
Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Frame = +1
Query: 661 PXXRAXPGGPXAPXXPPXXXPPPXPSXXSXPGXPPXGASPLXXP-XRXPPXXXP 819
P A G P P P P PS P P GA P+ P PP P
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVP 1136
Score = 29.5 bits (63), Expect = 0.79
Identities = 15/54 (27%), Positives = 17/54 (31%)
Frame = +1
Query: 658 PPXXRAXPGGPXAPXXPPXXXPPPXPSXXSXPGXPPXGASPLXXPXRXPPXXXP 819
PP + P P P P PS P A P+ P PP P
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKP 1145
Score = 27.9 bits (59), Expect = 2.4
Identities = 20/70 (28%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Frame = +3
Query: 645 PAAXXPPXPRXXXGSXGSXXPXXXXPP-PXAXXXXPPRXPPXXXLPPXXPXPXPAPXXXX 821
P+ PP P G+ P PP P PP P +PP P P AP
Sbjct: 1145 PSVAAPPVPAPS-GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP-PSEAPPVPK 1202
Query: 822 XXXXXXAXPP 851
PP
Sbjct: 1203 PSVGVPPVPP 1212
Score = 27.9 bits (59), Expect = 2.4
Identities = 15/55 (27%), Positives = 17/55 (30%)
Frame = +3
Query: 645 PAAXXPPXPRXXXGSXGSXXPXXXXPPPXAXXXXPPRXPPXXXLPPXXPXPXPAP 809
P + PP P+ G P P P PP P PP AP
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAP 1247
Score = 27.1 bits (57), Expect = 4.2
Identities = 13/40 (32%), Positives = 15/40 (37%)
Frame = +1
Query: 688 PXAPXXPPXXXPPPXPSXXSXPGXPPXGASPLXXPXRXPP 807
P P P P PS + P P A P+ P PP
Sbjct: 1012 PPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPP 1051
Score = 26.6 bits (56), Expect = 5.6
Identities = 20/75 (26%), Positives = 22/75 (29%), Gaps = 8/75 (10%)
Frame = +3
Query: 609 PXXXPXXXXGXXPAAXXPPXPRXXXGSXGSXXPXXXXPPPXAXXXXPPRXPPXXXLP--- 779
P P P A PP P+ + P PP PP P P
Sbjct: 995 PLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPK 1054
Query: 780 -----PXXPXPXPAP 809
P P P PAP
Sbjct: 1055 SSSGAPSAPPPVPAP 1069
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.9 bits (64), Expect = 0.60
Identities = 19/61 (31%), Positives = 21/61 (34%)
Frame = -1
Query: 850 GGXAXXXXXXXXXXGAGXGXGXXGGRXXXGGXRGGXXXXAXGGGXXXXGXXEPXDPXXXR 671
GG G G G G GGR GG RGG + G G G +P
Sbjct: 23 GGRGGFGGGRGGARGGGRG-GARGGRGGRGGARGGRGGSSGGRGGAKGGAKVIIEPHRHA 81
Query: 670 G 668
G
Sbjct: 82 G 82
Score = 27.1 bits (57), Expect = 4.2
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -1
Query: 802 GXGXGXXGGRXXXGGXRGGXXXXAXGGGXXXXG 704
G G GGR GG RGG GG G
Sbjct: 16 GGRGGFNGGRGGFGGGRGGARGGGRGGARGGRG 48
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.9 bits (64), Expect = 0.60
Identities = 20/79 (25%), Positives = 22/79 (27%)
Frame = +3
Query: 570 NXXXAXAPXXAXXPXXXPXXXXGXXPAAXXPPXPRXXXGSXGSXXPXXXXPPPXAXXXXP 749
N P P P P+A P P + PP A
Sbjct: 408 NASRTSTPPVPTPPSLPPSAPPSLPPSAP-PSLPMGAPAAPPLPPSAPIAPPLPAGMPAA 466
Query: 750 PRXPPXXXLPPXXPXPXPA 806
P PP PP P P PA
Sbjct: 467 PPLPPAAPAPPPAPAPAPA 485
Score = 29.9 bits (64), Expect = 0.60
Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Frame = +1
Query: 643 PXRXPPPXXRAXP-GGPXAPXXPPXXX-PPPXPSXXSXPGXPP-XGASPLXXPXRXPPXX 813
P PP + P G P AP PP PP P+ P PP A+P P P
Sbjct: 428 PPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPA--GMPAAPPLPPAAPAPPPAPAPAPA 485
Query: 814 XP 819
P
Sbjct: 486 AP 487
Score = 28.3 bits (60), Expect = 1.8
Identities = 18/57 (31%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Frame = +3
Query: 645 PAAXXPPXPRXXXGSXGSXXPXXXXPPPXAXXXXP--PRXPPXXXLPPXXPXPXPAP 809
P + P P S P PP A P P LPP P P PAP
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480
Score = 27.9 bits (59), Expect = 2.4
Identities = 24/81 (29%), Positives = 26/81 (32%), Gaps = 8/81 (9%)
Frame = +1
Query: 589 PPXRPXXRXXGXXXRG------VXPXRXPPPXXRAXPGGPXAPXXPPXXXPPPXPSXXSX 750
PP P R G G P PPP A P P PPP S S
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPST 372
Query: 751 PGXPPXGAS--PLXXPXRXPP 807
PP +S + P PP
Sbjct: 373 GRQPPPLSSSRAVSNPPAPPP 393
Score = 26.6 bits (56), Expect = 5.6
Identities = 35/146 (23%), Positives = 42/146 (28%), Gaps = 1/146 (0%)
Frame = +1
Query: 358 PGAGGGXGGFXXXXAPAPARGEGVCVWGAXPXPRXLPRXRSXXXGXXARFXXPXGXXXGP 537
P G G P P R G+ P P P+ RS R G P
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAA---GSIPLP---PQGRSAPPPPPPRSAPSTGRQP-P 377
Query: 538 PXXSGXXXXXGTXXXXXPPXRPXXRXXGXXXRGVXPXRXPPPXXRAXPGGPXAPXXPPXX 717
P S + PP P G PP P AP P
Sbjct: 378 PLSSSRAV---SNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPS 434
Query: 718 XPPPXP-SXXSXPGXPPXGASPLXXP 792
PP P + P PP ++P+ P
Sbjct: 435 APPSLPMGAPAAPPLPP--SAPIAPP 458
Score = 26.2 bits (55), Expect = 7.4
Identities = 18/53 (33%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Frame = +1
Query: 655 PPPXXRAXPGGPXAPXXPPXXXPPPXPSXXSXPGXPP--XGASPLXXPXRXPP 807
PPP R A P PPP P G PP G+S P PP
Sbjct: 293 PPPSSRVSAAALAANKKRP---PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 29.5 bits (63), Expect = 0.79
Identities = 16/49 (32%), Positives = 16/49 (32%), Gaps = 2/49 (4%)
Frame = +3
Query: 663 PXPRXXXGSXGSXXPXXXXPP--PXAXXXXPPRXPPXXXLPPXXPXPXP 803
P P G P P P PP PP LPP P P P
Sbjct: 492 PLPPTTFAPPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFP 540
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.5 bits (63), Expect = 0.79
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 926 PXPPPXXAXAXXPPPPAXP 982
P PPP A A PPPP P
Sbjct: 764 PPPPPGVAGAGPPPPPPPP 782
Score = 27.5 bits (58), Expect = 3.2
Identities = 16/52 (30%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
Frame = +3
Query: 660 PPXPRXXXGSXGSXXPXXXXPPPXAXXXXPPRXPPXXXL---PPXXPXPXPA 806
PP P + P PP PP PP PP P P PA
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = +3
Query: 720 PPPXAXXXXPPRXPPXXXLPPXXPXPXPAP 809
PPP PP PP + P P P P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 26.2 bits (55), Expect = 7.4
Identities = 11/35 (31%), Positives = 12/35 (34%)
Frame = +3
Query: 747 PPRXPPXXXLPPXXPXPXPAPXXXXXXXXXXAXPP 851
PP PP +P P P P P PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
Score = 26.2 bits (55), Expect = 7.4
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = +2
Query: 926 PXPPPXXAXAXXPPPPAXP 982
P PPP PPPP P
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781
Score = 25.8 bits (54), Expect = 9.8
Identities = 17/56 (30%), Positives = 18/56 (32%), Gaps = 6/56 (10%)
Frame = +1
Query: 643 PXRXPPPXXRAXPGGPXAPXXPP------XXXPPPXPSXXSXPGXPPXGASPLXXP 792
P P P GGP P PP PPP P S G +P P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801
Score = 25.8 bits (54), Expect = 9.8
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = +2
Query: 926 PXPPPXXAXAXXPPPPAXP 982
P PPP PPPP P
Sbjct: 750 PVPPPAPIMGGPPPPPPPP 768
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 1.4
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +1
Query: 679 PGGPXAPXXPPXXXPPPXPSXXSXPG 756
PG P P PP PP P PG
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 26.6 bits (56), Expect = 5.6
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 747 PPRXPPXXXLPPXXPXPXPAP 809
PP PP PP P P P P
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 27.5 bits (58), Expect = 3.2
Identities = 12/41 (29%), Positives = 14/41 (34%)
Frame = +1
Query: 661 PXXRAXPGGPXAPXXPPXXXPPPXPSXXSXPGXPPXGASPL 783
P P P P P PP P P P A+P+
Sbjct: 512 PSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPV 552
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 5.6
Identities = 20/69 (28%), Positives = 20/69 (28%), Gaps = 1/69 (1%)
Frame = +3
Query: 588 APXXAXXPXXXPXXXXGXXPAAXXPPXPRXXXGSXGSXXPXXXXPPPXAXXXXPPRXP-P 764
AP A P P P PP P S S P PP PP P
Sbjct: 123 APPSAPAP---PTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAA 179
Query: 765 XXXLPPXXP 791
PP P
Sbjct: 180 PVKSPPSAP 188
Score = 26.2 bits (55), Expect = 7.4
Identities = 21/73 (28%), Positives = 23/73 (31%)
Frame = +1
Query: 601 PXXRXXGXXXRGVXPXRXPPPXXRAXPGGPXAPXXPPXXXPPPXPSXXSXPGXPPXGASP 780
P R G P P P P P PPP P+ S P P A P
Sbjct: 110 PKLRHIGKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPA--SAPPIPSK-APP 166
Query: 781 LXXPXRXPPXXXP 819
+ P PP P
Sbjct: 167 I--PSSLPPPAQP 177
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.8 bits (54), Expect = 9.8
Identities = 15/50 (30%), Positives = 15/50 (30%)
Frame = +1
Query: 643 PXRXPPPXXRAXPGGPXAPXXPPXXXPPPXPSXXSXPGXPPXGASPLXXP 792
P PP A G P P P S P PP AS P
Sbjct: 1905 PPAGPPAGATAISGNPGMPAPVPLTGKETAVPLSSMPNAPPSVASNAKLP 1954
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,527,002
Number of Sequences: 5004
Number of extensions: 16034
Number of successful extensions: 204
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 529254290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -