Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_C13
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|c...   182   6e-47
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe...    87   2e-18
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce...    28   1.5  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   3.5  
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    26   6.1  

>SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 291

 Score =  182 bits (443), Expect = 6e-47
 Identities = 79/191 (41%), Positives = 120/191 (62%)
 Frame = +2

Query: 137 KHFIQKLVSQGHRLDGRNFNETRKLDISFGSEYGCCIVSLGETKILSEVTCEVAQPKQIR 316
           K F+   + +G RLDGR  ++ R L+I FG EYG   VS G T++++ +T E+ +P   R
Sbjct: 12  KEFVLNSLEKGLRLDGRQLSDFRSLEIQFGKEYGQVDVSFGHTRVMARITTEITKPYTDR 71

Query: 317 PNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLCIVVEXKVW 496
           P +GI  I  EL P+A   FEA R +D  + + RL+EK  + S  +D ESLCI+   K W
Sbjct: 72  PFDGIFSITTELTPLAYSAFEAGRVSDQEIVISRLIEKAVRRSNALDTESLCIISGQKCW 131

Query: 497 SLRINIKVLNHDGNLTECASIATLASIAHFRRPDFTRDGDRVIIHTLTEKDPIPPVLYHY 676
            +R ++  +NHDGNL + A IA +A++ HFRRP+ T  G+ V +H + E+ P+P  + H 
Sbjct: 132 HVRASVHFINHDGNLVDAACIAVIAALCHFRRPELTVVGEEVTVHPVEERVPVPLSILHM 191

Query: 677 PVCTTFALYSN 709
           P+C TF+ ++N
Sbjct: 192 PICVTFSFFNN 202


>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 87.4 bits (207), Expect = 2e-18
 Identities = 63/204 (30%), Positives = 104/204 (50%), Gaps = 6/204 (2%)
 Frame = +2

Query: 137 KHFIQKLVSQGHRLDGRNFNETRKLDIS---FGSEYGCCIVSLGETKILSEVTCEVAQPK 307
           + ++  L++Q  R DGR+ +E R++ I+     +  G  I+  GE   +  +  E+A+P 
Sbjct: 23  EQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKAEIAEPF 82

Query: 308 QIRPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLCIVVEX 487
           +  PNEG I  N+EL+P+ + +F+    +DL   + + L +  + S  I+L+SLCI  + 
Sbjct: 83  ENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQSNLINLQSLCIFEKK 142

Query: 488 KVWSLRINIKVLNHDGNLTECASIATLASIAHFRRPDFTRDGD--RVI-IHTLTEKDPIP 658
             W L  +I  LN+DG+  + A  A  A++   + P    D D  RVI   TLT      
Sbjct: 143 AAWVLYADIICLNYDGSAFDYAWAALFAALKTVKLPTAVWDEDLERVICASTLTR----- 197

Query: 659 PVLYHYPVCTTFALYSNDILLSDP 730
           PV     V +      +D LL+DP
Sbjct: 198 PVQLSTEVRSFSWSVFDDKLLADP 221


>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -3

Query: 318 GLICFG*ATSHVTSDRIFVSPKDTI 244
           GLI F  AT+H ++ + F+ PKDT+
Sbjct: 203 GLIAFRKATAHQSAMKEFLKPKDTL 227


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/41 (41%), Positives = 28/41 (68%)
 Frame = +3

Query: 111  LXLVXRIVXSISYKSSYLKDIVWTVEILMKPEN*IYHLVLN 233
            L ++ R+V +IS ++SYL+D  ++VEIL    +  Y LV+N
Sbjct: 1609 LEIISRLVGTISDETSYLRD--YSVEILRTFNS--YVLVMN 1645


>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +2

Query: 296 AQPKQIRPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSK 448
           A   +I+PNE +  + V  NP    + E  +     V  ++ L+K Y++S+
Sbjct: 189 ASSARIQPNEDVQSVVVHSNPSWKNKVEQIKNESRLVRKIQELKKSYQESE 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,166,470
Number of Sequences: 5004
Number of extensions: 63136
Number of successful extensions: 153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)