Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_C13
(875 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0185 - 20748206-20748405,20749067-20749232,20749373-207494... 132 3e-32
11_03_0222 + 11880333-11880551,11880667-11880736,11880839-118809... 56 4e-08
12_02_0002 + 12119832-12120003,12120620-12120866,12121011-121210... 36 0.032
12_02_0726 - 22552005-22552035,22552507-22552598,22552970-225530... 30 2.1
>02_04_0185 -
20748206-20748405,20749067-20749232,20749373-20749471,
20749487-20749561,20749663-20749743,20750121-20750274,
20750330-20750425,20750518-20750727,20750746-20750957
Length = 430
Score = 132 bits (318), Expect(2) = 3e-32
Identities = 68/194 (35%), Positives = 116/194 (59%), Gaps = 17/194 (8%)
Frame = +2
Query: 224 GSEYGCCIVSLGETKILSEVTCEVAQPKQIRPNEGIIFINVELNPMAAPQFEANRQTDLT 403
G E G V LG+T+++ T ++ QP + RPNEG + I E +PMA P FE R +
Sbjct: 70 GVEDGSAEVQLGDTRVMGYATAQLVQPYKDRPNEGTLAIFTEFSPMADPAFEPGRPGESA 129
Query: 404 VYLVRLLEKCYKDSKCIDLESLCIVVEXKVWSLRINIKVLNHDG-------------NLT 544
+ L R++++ ++S+ +D+ESLC+V VWS+R+++ +L++ G NL
Sbjct: 130 IELGRVVDRGLRESRAVDMESLCVVAGKHVWSVRVDLHILDNGGELNVPDAMVLSLRNLI 189
Query: 545 ECASIATLASIAHFRRPDFT---RDGDRVIIHTLTEKDPIPPVLYHYPVCTTFALY-SND 712
+ A+IA LA+++ FRRP+ T DG +V +H +DP+P ++H P+ TFA + +
Sbjct: 190 DAANIAALAALSTFRRPECTVGGEDGQQVTVHDPEVRDPLPLTIHHLPIAVTFAYFGEGN 249
Query: 713 ILLSDPNSWKNQCV 754
I++ DP ++K + V
Sbjct: 250 IMVIDP-TYKEEAV 262
Score = 25.0 bits (52), Expect(2) = 3e-32
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 137 KHFIQKLVSQGHRLDGRNFNETRKLDISFG 226
+ FI++ + R+DGR + R+L I FG
Sbjct: 14 REFIERALQSDLRVDGRRPFDFRRLKILFG 43
>11_03_0222 +
11880333-11880551,11880667-11880736,11880839-11880944,
11881490-11881556,11881597-11881692
Length = 185
Score = 56.0 bits (129), Expect = 4e-08
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Frame = +2
Query: 143 FIQKLVSQGHRLDGRNFNETRKLDISFG---SEYGCCIVSLGETKILSEVTCEVAQPKQI 313
F+++ + + R D R E R ++ S +G +V LG+T +L+ + EV P
Sbjct: 30 FLERHLRESVRPDARRPAEARPTTVALAAVSSAHGSALVRLGDTAMLASIKLEVMSPSGE 89
Query: 314 RPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLCIVVEXKV 493
P+EG I + + P+ +P R ++ + + LE S ++L+ LC++
Sbjct: 90 APDEGSIAVEFHMPPICSPLVRPGRPAEVAPVISKNLEDILMSSGMLNLKELCLISGKAS 149
Query: 494 W 496
W
Sbjct: 150 W 150
>12_02_0002 +
12119832-12120003,12120620-12120866,12121011-12121050,
12121584-12121676,12124850-12124928,12124973-12125019,
12126178-12126266,12126353-12126424,12126617-12126710,
12127167-12127206,12127321-12127445,12130472-12130615,
12131510-12131740
Length = 490
Score = 36.3 bits (80), Expect = 0.032
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 290 EVAQPKQIRPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSK 448
E+ +P + P++G + I V+ +P AAP FE + + L L++C K
Sbjct: 155 ELGKPSILHPDKGKVSIFVDCSPTAAPMFEGRGSEEFSAELCVALQRCLLGGK 207
Score = 32.3 bits (70), Expect = 0.52
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Frame = +2
Query: 137 KHFIQKLVSQGHRLDGRNFNETRKLDISFG---SEYGC---CIVSLGETKILSEVTCEVA 298
KHFI+ ++Q R DGR + R + + G +G C+ S+G V C A
Sbjct: 9 KHFIRGGIAQDLRTDGRRRLQFRAISVETGVIPQVFGFISPCVFSIGRA-----VACIEA 63
Query: 299 QPKQIRPNEGI-IFINVELNPMAAPQFEANRQTDLTVYLV 415
P + G+ + +E++P AA + +A + + +V
Sbjct: 64 SPTAEYTDAGLQDIVQIEVDPAAAAEIDAKLTVAVQIEVV 103
Score = 31.5 bits (68), Expect = 0.92
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 419 LLEKCYKDSKCIDLESLCIVVEXKV-WSLRINIKVLNHDGNLTECASIATLASIA 580
+ +K IDL SL IVV+ KV W L I+ V++ DGNL + + A +++
Sbjct: 317 IFKKTLMKRAAIDLSSL-IVVDGKVCWDLYIDGLVVSSDGNLLDALAAAIKVALS 370
>12_02_0726 -
22552005-22552035,22552507-22552598,22552970-22553094,
22553221-22553311,22553475-22553755,22554211-22554394,
22554499-22554583,22554692-22554782,22554909-22555293,
22555457-22555669,22555873-22556418,22556572-22556788,
22556907-22557058,22557519-22557663,22557846-22557907,
22559130-22559291,22559393-22559482,22560055-22560215,
22560907-22560997,22561125-22561308,22561556-22561737,
22561857-22562086,22562622-22562685
Length = 1287
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = +1
Query: 82 KKICTNNKMRXYLFXELXKAFHTKARISRTSFGRSKF**NPKTRYIIWF 228
KK C NNK R +F E A + SR RS+F P+ +Y+ WF
Sbjct: 43 KKACLNNKARNPVFVENLPAEFIQTTDSRL---RSRF---PQDQYLFWF 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,415,652
Number of Sequences: 37544
Number of extensions: 367142
Number of successful extensions: 728
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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