Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_C13
         (875 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-15|AAC48298.2|  434|Caenorhabditis elegans Hypothetical p...   175   3e-44
Z92838-10|CAB07412.2|  312|Caenorhabditis elegans Hypothetical p...    43   3e-04
Z92832-9|CAB07377.2|  312|Caenorhabditis elegans Hypothetical pr...    43   3e-04
U00033-16|AAM29690.1|   65|Caenorhabditis elegans Hypothetical p...    36   0.029
U39999-1|AAK93855.1|  277|Caenorhabditis elegans Hypothetical pr...    33   0.27 
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    30   2.5  
AF003390-1|AAB54271.2|  473|Caenorhabditis elegans Hypothetical ...    30   2.5  
AC092690-2|AAK73855.2|  745|Caenorhabditis elegans Hypothetical ...    29   3.3  

>U00033-15|AAC48298.2|  434|Caenorhabditis elegans Hypothetical
           protein F37C12.13a protein.
          Length = 434

 Score =  175 bits (427), Expect = 3e-44
 Identities = 78/211 (36%), Positives = 134/211 (63%), Gaps = 1/211 (0%)
 Frame = +2

Query: 125 SNCXKHFIQKLVSQGHRLDGRNFNETRKLDISFGSEYGCCIVSLGETKILSEVTCEVAQP 304
           +NC K  I + +  G R D R+  E R + +  G+E G  I ++G TK+++ V+ E+A+P
Sbjct: 7   TNCEKAVILEALKIGKRFDFRSLEEFRDVKLVVGAEVGTAICTIGNTKVMAAVSAEIAEP 66

Query: 305 KQIRPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLCIVVE 484
             +RP++G+I I+V+L+PMA    E +R     + L+RLLE   +DS+CID+E+LCI   
Sbjct: 67  SSMRPHKGVINIDVDLSPMANYANEHDRLGSKGMELIRLLELIIRDSRCIDVEALCIRAG 126

Query: 485 XKVWSLRINIKVLNHDGNLTECASIATLASIAHFRRPDFTRDGDRVIIHTLTEKDPIPPV 664
            ++W +R+++++L+ DG+L +CA +A + ++ HFRRP+ T +    +I++  EK P+P  
Sbjct: 127 KEIWKIRVDVRILDEDGSLLDCACLAAITALQHFRRPNVTLEPHHTLIYSEYEKAPVPLN 186

Query: 665 LYHYPVCTTFALY-SNDILLSDPNSWKNQCV 754
           +YH P+CTT  L     I++ DP   +  C+
Sbjct: 187 IYHMPICTTIGLLDKGQIVVIDPTDKETACL 217


>Z92838-10|CAB07412.2|  312|Caenorhabditis elegans Hypothetical
           protein F31D4.1 protein.
          Length = 312

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 37/152 (24%), Positives = 71/152 (46%), Gaps = 10/152 (6%)
 Frame = +2

Query: 173 RLDGRNFNETRKLDISFG---SEYGCCIVSLGETK-ILSEVTCEVAQ---PKQIRPNEGI 331
           R DGR+  + R++ +  G      G C V LG+T  +L+ +  E+       +  P + I
Sbjct: 22  RNDGRSCQDFRQIILERGVLSGTNGSCRVQLGQTTDVLAGIKLELESYDAETEKEPKQPI 81

Query: 332 IFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLE---SLCIVVEXKVWSL 502
            F NV+ +  A+ QF      +    L    +  Y  SK +D+    +   + +   W +
Sbjct: 82  NF-NVDFSANASSQFAGKGGDEYAEELSAAFQAAY--SKALDIMPNLAKTQLADGYRWKI 138

Query: 503 RINIKVLNHDGNLTECASIATLASIAHFRRPD 598
            ++I VL  DG++++  SIA + +++    P+
Sbjct: 139 NVDISVLQWDGSVSDAISIAIIGALSDLEFPE 170


>Z92832-9|CAB07377.2|  312|Caenorhabditis elegans Hypothetical
           protein F31D4.1 protein.
          Length = 312

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 37/152 (24%), Positives = 71/152 (46%), Gaps = 10/152 (6%)
 Frame = +2

Query: 173 RLDGRNFNETRKLDISFG---SEYGCCIVSLGETK-ILSEVTCEVAQ---PKQIRPNEGI 331
           R DGR+  + R++ +  G      G C V LG+T  +L+ +  E+       +  P + I
Sbjct: 22  RNDGRSCQDFRQIILERGVLSGTNGSCRVQLGQTTDVLAGIKLELESYDAETEKEPKQPI 81

Query: 332 IFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLE---SLCIVVEXKVWSL 502
            F NV+ +  A+ QF      +    L    +  Y  SK +D+    +   + +   W +
Sbjct: 82  NF-NVDFSANASSQFAGKGGDEYAEELSAAFQAAY--SKALDIMPNLAKTQLADGYRWKI 138

Query: 503 RINIKVLNHDGNLTECASIATLASIAHFRRPD 598
            ++I VL  DG++++  SIA + +++    P+
Sbjct: 139 NVDISVLQWDGSVSDAISIAIIGALSDLEFPE 170


>U00033-16|AAM29690.1|   65|Caenorhabditis elegans Hypothetical
           protein F37C12.13b protein.
          Length = 65

 Score = 36.3 bits (80), Expect = 0.029
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +2

Query: 125 SNCXKHFIQKLVSQGHRLDGRNFNETRKLDISFGSEYGCCIVSLGETK 268
           +NC K  I + +  G R D R+  E R + +  G+E G  I ++G TK
Sbjct: 7   TNCEKAVILEALKIGKRFDFRSLEEFRDVKLVVGAEVGTAICTIGNTK 54


>U39999-1|AAK93855.1|  277|Caenorhabditis elegans Hypothetical
           protein F41G3.14 protein.
          Length = 277

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 34/154 (22%), Positives = 70/154 (45%), Gaps = 3/154 (1%)
 Frame = +2

Query: 143 FIQKLVSQGHRLDGRNFNETRKLDISFGSEYGCCIVSLGETKILSEVTCEVAQPKQIRPN 322
           +    + +G   DGR   + +KL    G E G    S+  T+ ++ V+C +     +  +
Sbjct: 14  YFATFIKEGVYPDGRGLLDEQKLVFKQG-ECGGVGSSVVSTQGVT-VSCSIQASVSLVSD 71

Query: 323 EGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCY---KDSKCIDLESLCIVVEXKV 493
             ++ I +E +   +   E + +   +V L      C+   ++ +C+D+    + +E   
Sbjct: 72  APLVDIKIEGSQQLS---EKDAEDCNSVLLSLFTNNCFVRRENLRCLDVCGKPLPLE--- 125

Query: 494 WSLRINIKVLNHDGNLTECASIATLASIAHFRRP 595
           W L I +KVL+ +GN  + A  A  A++   + P
Sbjct: 126 WQLHIIVKVLSLEGNFLDAAVCALGAALVDAKLP 159


>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical
           protein ZK783.1 protein.
          Length = 2585

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +2

Query: 425 EKCYKDSKCIDLESLCIVVEXKVWSLRINIKVLNHDGNLTECA--SIATLASIAHFRRPD 598
           +KC   ++C++ +S+C  V  +  +L    K   H     EC   + ++ +S       D
Sbjct: 413 KKCVDINECVENDSVCGGVGDRCVNLFGGFKCCQHGSTEAECTDQAFSSDSSTISSHGAD 472

Query: 599 FTRDGDRVI 625
           FT  G+++I
Sbjct: 473 FTTTGEQII 481


>AF003390-1|AAB54271.2|  473|Caenorhabditis elegans Hypothetical
           protein R155.1a protein.
          Length = 473

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/63 (26%), Positives = 36/63 (57%)
 Frame = +2

Query: 155 LVSQGHRLDGRNFNETRKLDISFGSEYGCCIVSLGETKILSEVTCEVAQPKQIRPNEGII 334
           +V  GH L G  F+ET   DI++ + +  CI++L    ++ +V     +P+ ++P++ + 
Sbjct: 95  IVFLGHLLIGYWFHETDTYDITWTTPF--CIMTLRFIGLVMDVYDGAQKPEHLKPDQKLT 152

Query: 335 FIN 343
            I+
Sbjct: 153 AIS 155


>AC092690-2|AAK73855.2|  745|Caenorhabditis elegans Hypothetical
           protein BE0003N10.1 protein.
          Length = 745

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +2

Query: 167 GHRLDGRNFNETRKLDIS---FGSEYGCCIVSLGETKILSEVT 286
           G R DGR  +E R + I    +   +GC I   G+T+++S VT
Sbjct: 332 GIRCDGRRPDEFRPITIHVDMYKKLHGCSIFQRGQTQVMSTVT 374


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,607,980
Number of Sequences: 27780
Number of extensions: 356764
Number of successful extensions: 871
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)