Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_C13
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   1.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   4.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.5  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 642 RKTQYHQFCIIILCVXHLHCTVMISYSPILIPGKISV 752
           RKT ++   +II CV     TV++ Y P     K+S+
Sbjct: 247 RKTLFYTVNLIIPCVGITFLTVLVFYLPSDSGEKVSL 283


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 642 RKTQYHQFCIIILCVXHLHCTVMISYSPILIPGKISV 752
           RKT ++   +II C+     TV++ Y P     K+S+
Sbjct: 238 RKTLFYTVNLIIPCMGISFLTVLVFYLPSDSGEKVSL 274


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 642 RKTQYHQFCIIILCVXHLHCTVMISYSPILIPGKISV 752
           RKT ++   +II CV     +V++ Y P     K+S+
Sbjct: 234 RKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSL 270


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 642 RKTQYHQFCIIILCVXHLHCTVMISYSP 725
           RKT ++   III C+     TV+  Y P
Sbjct: 242 RKTLFYTVNIIIPCMGISFLTVLTFYLP 269


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 642 RKTQYHQFCIIILCVXHLHCTVMISYSP 725
           RKT ++   III C+     TV+  Y P
Sbjct: 242 RKTLFYTVNIIIPCMGISFLTVLTFYLP 269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,455
Number of Sequences: 438
Number of extensions: 4189
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)