Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_C11
         (949 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    62   2e-08
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    58   4e-07
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    52   2e-05
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    44   0.004
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    42   0.023
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.093
UniRef50_Q9JMR9 Cluster: Uncharacterized protein yuaV; n=2; Esch...    34   6.1  

>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 62.1 bits (144), Expect = 2e-08
 Identities = 29/38 (76%), Positives = 29/38 (76%)
 Frame = -2

Query: 624 PCADXLLTCSFLRYPLILWITVLPPLSEXIPLAAAERP 511
           P    LLTCSF  YPLILWITVLPPLSE  PLAA ERP
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 57.6 bits (133), Expect = 4e-07
 Identities = 32/57 (56%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = +1

Query: 424 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYXL-TQRR*YGYPQNQGITQ 591
           CI + A AR EAV VL ALPL RS TRC RS GCG      +  R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 52.0 bits (119), Expect = 2e-05
 Identities = 23/33 (69%), Positives = 25/33 (75%)
 Frame = +1

Query: 448 RGEAVCVLGALPLPRSLTRCARSFGCGERYXLT 546
           R   +C  G +PLPRSLTR ARSFGCGERY LT
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 44.4 bits (100), Expect = 0.004
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +3

Query: 543 HSKAVIRLSTESGDNAGKNM 602
           HSKAVIRLSTESGDNAGKNM
Sbjct: 40  HSKAVIRLSTESGDNAGKNM 59


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 41.9 bits (94), Expect = 0.023
 Identities = 22/41 (53%), Positives = 26/41 (63%)
 Frame = +2

Query: 350 INKLTTTIAFILCFRFRXEVWEVFSALMNRPTRGERRFAYW 472
           +++LT      L  RF      V +ALMNRPTRGERRFAYW
Sbjct: 1   MSELTHINCVALTARFPVGKPVVPAALMNRPTRGERRFAYW 41


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.9 bits (89), Expect = 0.093
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = -3

Query: 494 ERGSGRAPNTQTASPRALADSLMQ 423
           +R +  APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_Q9JMR9 Cluster: Uncharacterized protein yuaV; n=2;
           Escherichia coli|Rep: Uncharacterized protein yuaV -
           Escherichia coli (strain K12)
          Length = 76

 Score = 33.9 bits (74), Expect = 6.1
 Identities = 21/44 (47%), Positives = 22/44 (50%)
 Frame = -2

Query: 654 PATRPFYGSWPCADXLLTCSFLRYPLILWITVLPPLSEXIPLAA 523
           PA  P    +P AD   T SF  YP  LWITV P L E   L A
Sbjct: 33  PAAAPPAVFFPGADFPGTYSFRSYPQNLWITVAPLLREKALLTA 76


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 720,764,019
Number of Sequences: 1657284
Number of extensions: 11324292
Number of successful extensions: 22974
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 22170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22963
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 87365783978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)