Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_C09
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po...    33   0.071
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    29   1.2  
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    27   2.7  
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    27   4.7  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   6.2  
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    26   6.2  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   8.2  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    26   8.2  

>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 32.7 bits (71), Expect = 0.071
 Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 7/120 (5%)
 Frame = +3

Query: 36  LRFCPFHSKNFACVKS*RKM--KSFIEYSSDSDFPIENLPY-GVFTSDKN--AQKHIGVA 200
           L  CP  +    CV S  ++  + F+E         ++  Y G +T +     QKH  + 
Sbjct: 254 LTMCPLSNLKLRCVNSIAELPVREFLEAGVPFSINCDDPAYFGGYTLENYFAIQKHFNLT 313

Query: 201 IGEWILDLNIISHLFDGPLLKGKQNVFKEEKLNAFMALTKPHWIEARE--TLQKLLDVSS 374
           + EW+    I +   +G  + GK+   KEE L++     K +  E ++  TL+  ++V +
Sbjct: 314 VKEWVF---IANAAINGSWISGKR---KEELLSSVQKCVKEYTAEIQQPKTLETAVEVQA 367


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
 Frame = +3

Query: 546 NWKHLPVG-----YHGRSSSIVISGTPIHRPYGQTLPVEGAAPHFGPCRLMDFELEVGAF 710
           NW HLP       Y  R S+  I     ++    +LP EG      P R+M F++E    
Sbjct: 248 NWIHLPASKYQFRYQNRVSNCQIEAWINYKDL-ISLPAEGQWSKMAPLRIMSFDIECAGR 306

Query: 711 AG 716
            G
Sbjct: 307 KG 308


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +2

Query: 464 LHRLLFVAAARYQRRHNVQGKGGRSVRELETSTGGLSWTFQFYSDLWHTYPQALWT 631
           L  L+  A A  +R   + G   ++V  + T +G L W    + DL  T P   WT
Sbjct: 291 LFTLILDAKALKRRTRGIIGLTIQAVVIMATLSGELGWIVSKHIDLHDTSPDLDWT 346


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 569 LSWTFQFYSDLWHTYPQALWTDLACRRCGAPL 664
           L  TF F+SDL+  +P   W   A R    PL
Sbjct: 229 LDCTFSFFSDLFSRFPVQSWYSEAIRANLQPL 260


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
 Frame = -1

Query: 769 LSSASLAQTLSPSCVGGPPANAP-----TSSSKSISLQGPKWGAAPSTGKVC 629
           LS+ S  +  S SC     A+ P     TSS+ S S  G      PST   C
Sbjct: 64  LSTGSPVEITSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPLPSTSTSC 115


>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +2

Query: 194 RGYRRMDFRFEYYFTFIRWPAT*RQAKCIQGREIKRVYGTDQTSLDRGK 340
           +G      R++    F RW A   +   I+   I +VY  DQ ++ +G+
Sbjct: 127 QGGELCSLRYDLTVPFARWLAMNPKVTSIKRFHIAKVYRRDQPAMTKGR 175


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 175 FLSDVNTPYGKFSIGKSESDEYSMK 101
           F SD N+    FS+G++ S  YS+K
Sbjct: 101 FKSDTNSTSSGFSVGEAISSGYSLK 125


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 19/61 (31%), Positives = 25/61 (40%)
 Frame = -1

Query: 865  PGFXPXTXPRGMXSHFXMSRALQSFKSTKPKILSSASLAQTLSPSCVGGPPANAPTSSSK 686
            PG+   T P  M S    S    S+  T P    ++      SPS     P+ +PTS S 
Sbjct: 1563 PGYS--TSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSY 1620

Query: 685  S 683
            S
Sbjct: 1621 S 1621


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,889,068
Number of Sequences: 5004
Number of extensions: 90153
Number of successful extensions: 272
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)