Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_C09
(883 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0724 - 5415218-5415280,5415398-5415523,5415614-5415710,541... 259 2e-69
07_03_0486 - 18634813-18635168,18635258-18638726 30 2.8
05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784 30 2.8
10_01_0264 - 2773835-2774201,2774595-2775330,2775430-2775496 29 3.7
03_05_0642 - 26346260-26346367,26347902-26348162,26348542-263498... 29 3.7
05_05_0005 + 21442819-21442916,21443053-21443119,21443226-214432... 29 4.9
06_01_0263 + 1936927-1936936,1937031-1937305,1937727-1938079,193... 29 6.5
01_06_0529 - 30026101-30026277,30026363-30026438,30026509-300265... 29 6.5
06_03_0970 + 26424209-26424910,26425053-26425109,26425251-264254... 28 8.6
04_04_0707 - 27435894-27436474,27437707-27438241 28 8.6
>02_01_0724 -
5415218-5415280,5415398-5415523,5415614-5415710,
5415797-5415861,5415964-5416026,5416127-5416197,
5416430-5416489,5416564-5416663,5416863-5416938,
5417284-5417358,5417451-5417575,5417664-5417722,
5418031-5418109,5418303-5418533
Length = 429
Score = 259 bits (635), Expect = 2e-69
Identities = 126/268 (47%), Positives = 171/268 (63%), Gaps = 5/268 (1%)
Frame = +3
Query: 93 MKSFIEYSSDSDFPIENLPYGVFT---SDKNAQKHIGVAIGEWILDLNIISH--LFDGPL 257
++SF+E + S FPI+NLP+GVF S + VAIG++ LDL +S LF GPL
Sbjct: 9 LRSFVEVAPGSHFPIQNLPFGVFRRRGSPEPEPPRPAVAIGDFALDLAAVSDAGLFHGPL 68
Query: 258 LKGKQNVFKEEKLNAFMALTKPHWIEARETLQKLLDVSSPALQNNAELREKAFVKQRDVQ 437
L F++E LN F+ + +P W EAR TLQK+L P L++N L++K V D +
Sbjct: 69 LSASP-CFRQETLNMFLGMGRPAWKEARATLQKILSADEPVLRDNEALKKKCLVPMSDTE 127
Query: 438 MHVPVEVGDYTDFYSSLQHATNVGIMFRGKEAALFENWKHLPVGYHGRSSSIVISGTPIH 617
M +P+ VGDYTDF+ S+ HA N G +FRG + + NW LPVGYHGR+SS+++SGT I
Sbjct: 128 MLLPITVGDYTDFFCSVHHARNCGFIFRGPQTPVNPNWFQLPVGYHGRASSVIVSGTDII 187
Query: 618 RPYGQTLPVEGAAPHFGPCRLMDFELEVGAFAGGPPTQLGERVCAKDAEDKIFGFVLLND 797
RP GQ P + P+FGP + +DFELE+ A GP +LG+ + DAE+ IFG +++ND
Sbjct: 188 RPKGQGHPTGDSRPYFGPSKKLDFELEMAAIV-GPGNELGKPIDINDAEEHIFGLMIMND 246
Query: 798 WSARDIXKWEXIPLGXVXGXKPGXTISP 881
WSARDI WE IPLG G T+SP
Sbjct: 247 WSARDIQAWETIPLGPFLGKSFSTTVSP 274
>07_03_0486 - 18634813-18635168,18635258-18638726
Length = 1274
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 648 GAAPHFGPCRLMDFELEVGAFAGGPPTQLG 737
G P G RL+ F+ +F+GG P QLG
Sbjct: 581 GLLPLCGSARLLSFDATNNSFSGGIPAQLG 610
>05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784
Length = 394
Score = 29.9 bits (64), Expect = 2.8
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -1
Query: 811 SRALQSFKSTKPKILSSASLAQTLSPSCVGGPPANAP-TSSSKSISLQGPKWGAAPSTGK 635
SRA + K + + +S+S A A AP TSS + S P W AP G
Sbjct: 67 SRATMTLKRRRRPVRASSSPAPADPMPTPAASSALAPATSSPRPASPPTPPWTTAPPPGI 126
Query: 634 VCP*GLWI 611
P LWI
Sbjct: 127 AAP-PLWI 133
>10_01_0264 - 2773835-2774201,2774595-2775330,2775430-2775496
Length = 389
Score = 29.5 bits (63), Expect = 3.7
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Frame = -1
Query: 799 QSFKSTKPKILSSASLAQTLSPSCVGGP-------PANAPTSSSKSISLQGPKWGAAPST 641
Q FKS P+ S A T + +C GGP PA++P+ S KS + P T
Sbjct: 228 QVFKSACPRSYSYAFDDPTSTFTCSGGPDYTLTFCPASSPSGSQKSTTATPTPAAMMPGT 287
Query: 640 G 638
G
Sbjct: 288 G 288
>03_05_0642 -
26346260-26346367,26347902-26348162,26348542-26349849,
26349960-26350178,26350241-26350300,26352159-26352215,
26352945-26353029,26353486-26353843,26353931-26355170
Length = 1231
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Frame = +3
Query: 720 PPTQLGERVCAKDAEDKIFGFVLL---NDWSA 806
PPT + RV DAED + LL NDW A
Sbjct: 517 PPTAMANRVLFTDAEDGLLALGLLEYNNDWGA 548
>05_05_0005 + 21442819-21442916,21443053-21443119,21443226-21443291,
21443368-21443414,21443480-21443543,21443627-21443707,
21443781-21443823,21443912-21443961,21444262-21444343,
21445045-21445120,21445451-21445558,21445782-21445833,
21445911-21446570,21446652-21448067
Length = 969
Score = 29.1 bits (62), Expect = 4.9
Identities = 21/58 (36%), Positives = 28/58 (48%)
Frame = +3
Query: 252 PLLKGKQNVFKEEKLNAFMALTKPHWIEARETLQKLLDVSSPALQNNAELREKAFVKQ 425
P N KEE A AL + + E L+ LL++S+ L+NN L E A V Q
Sbjct: 880 PYTSEASNGVKEEASPAKEALDVTSFRQRAEALEGLLELSADLLENN-RLEELAIVLQ 936
>06_01_0263 +
1936927-1936936,1937031-1937305,1937727-1938079,
1938598-1938715,1938823-1938946,1939389-1939608,
1939948-1940017,1940083-1940136,1940536-1940604,
1941138-1941194,1941503-1941575,1942037-1942080,
1942629-1942751,1943092-1943321,1943552-1943660,
1944196-1944339,1944443-1944604,1944921-1945197,
1945326-1945486,1945591-1945782,1946789-1946971,
1946986-1947063,1947187-1947366,1947476-1947562
Length = 1130
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -3
Query: 500 GSVLQRRIEVCVISDFNRHVHLYVPLLHE 414
G VL RI + V+S + H+HL VPL E
Sbjct: 409 GVVLADRIHMLVLSMLDLHMHLEVPLRRE 437
>01_06_0529 -
30026101-30026277,30026363-30026438,30026509-30026570,
30026882-30027031,30027213-30027338,30028096-30028305,
30028870-30028938,30029024-30029080,30029131-30029277,
30029358-30029542,30029623-30029698,30029796-30029918,
30030395-30030410,30031743-30032745,30033521-30033789,
30034297-30034415
Length = 954
Score = 28.7 bits (61), Expect = 6.5
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Frame = +3
Query: 234 SHLFDGPLLKGKQNVFKEEK--LNAFMALTKPHWIEARETLQKLLDVSSPALQNNAELRE 407
+HL + PL + V KEE L A K +E ET + L + +A +RE
Sbjct: 204 AHLCESPLFM-ELTVLKEENMLLKADAQFLKAKIVEFAETEEFLFKLEKERSLLDATVRE 262
Query: 408 ---KAFVKQRDVQMHVPVEVGDYTDFYSSLQH 494
+ V Q D+ VP++ + + +LQH
Sbjct: 263 LEARFLVAQTDIWKVVPLQYDVWMEKVENLQH 294
>06_03_0970 +
26424209-26424910,26425053-26425109,26425251-26425478,
26425788-26425881,26425955-26426161,26426581-26426711,
26426943-26426992,26427125-26427432,26427548-26427651,
26427810-26428526,26429159-26429338,26429703-26429831
Length = 968
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 324 HWIEARETLQKLLDVSSPALQNNAELREKAFVKQRDVQMHVPVE 455
+W E L+K L+ S LQ L EK +++Q H PVE
Sbjct: 167 YWKERAMQLEKTLEAS---LQRERSLEEKLEENIKNLQSHTPVE 207
>04_04_0707 - 27435894-27436474,27437707-27438241
Length = 371
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 162 TSDKNAQK-HIGVAIGEWILDLNIISHLFDGPLLKGKQNVFKEEKLNAFMAL 314
+S NA+ H+ + + +L+ I S F L+K +N KE+ LNAF L
Sbjct: 294 SSSPNARDIHLPSSFKDLVLERKI-SDAFSSELVKQSKNSGKEQNLNAFFEL 344
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,029,045
Number of Sequences: 37544
Number of extensions: 632044
Number of successful extensions: 1783
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1778
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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