Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_C07
(857 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY122111-1|AAM52623.1| 276|Drosophila melanogaster GH12454p pro... 328 8e-90
AE014134-3047|AAF53765.1| 276|Drosophila melanogaster CG10691-P... 328 8e-90
AE014134-3046|AAN11026.1| 276|Drosophila melanogaster CG10691-P... 328 8e-90
AY061508-1|AAL29056.1| 299|Drosophila melanogaster LD46344p pro... 214 1e-55
AE013599-2777|AAM68447.1| 243|Drosophila melanogaster CG15081-P... 214 1e-55
AE013599-2776|AAF57631.2| 243|Drosophila melanogaster CG15081-P... 214 1e-55
AE013599-2775|AAF57632.2| 243|Drosophila melanogaster CG15081-P... 214 1e-55
X04228-3|CAA27810.1| 203|Drosophila melanogaster protein ( Dros... 175 8e-44
X04227-3|CAA27807.1| 203|Drosophila melanogaster URF 3 protein. 175 8e-44
BT021331-1|AAX33479.1| 398|Drosophila melanogaster RE02540p pro... 37 0.041
AY069196-1|AAL39341.1| 397|Drosophila melanogaster GH25458p pro... 37 0.041
AY060624-1|AAL28172.1| 505|Drosophila melanogaster GH04632p pro... 37 0.041
AE014296-877|AAF47920.2| 505|Drosophila melanogaster CG32245-PB... 37 0.041
AE014296-875|AAF47921.3| 397|Drosophila melanogaster CG32245-PA... 37 0.041
AE014296-874|AAN11610.2| 398|Drosophila melanogaster CG32245-PC... 37 0.041
>AY122111-1|AAM52623.1| 276|Drosophila melanogaster GH12454p
protein.
Length = 276
Score = 328 bits (805), Expect = 8e-90
Identities = 160/215 (74%), Positives = 177/215 (82%)
Frame = +1
Query: 139 MAAQLFNRIXXXXXXXXXXXXXXNSALYNVDGGHRAVIFDRFAGVKQLVVGEGTHFFIPW 318
MAAQ FNRI NSALYNV+GGHRAVIFDRF G+K+ VVGEGTHFFIPW
Sbjct: 1 MAAQFFNRIGQMGLGVAVLGGVVNSALYNVEGGHRAVIFDRFTGIKENVVGEGTHFFIPW 60
Query: 319 VQRPIIFDIRSRPRNVPTITGSKDLQNVNITLRILFRPVPDQLPRIYTILGIDYDERVLP 498
VQRPIIFDIRS+PRNVP ITGSKDLQNVNITLRIL+RP+PDQLP+IYTILG DYDERVLP
Sbjct: 61 VQRPIIFDIRSQPRNVPVITGSKDLQNVNITLRILYRPIPDQLPKIYTILGQDYDERVLP 120
Query: 499 SITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILDDISITHLTFGKEFT 678
SI EVLKAVVAQFDAGELITQRE+VSQ+V+ LT RA QFG ILDDIS+THLTFG+EFT
Sbjct: 121 SIAPEVLKAVVAQFDAGELITQREMVSQRVSQELTVRAKQFGFILDDISLTHLTFGREFT 180
Query: 679 QAVELKQVAQQEAEKARXL*RKLNTKXAALLLQXE 783
AVE+KQVAQQEAEKAR + K + A ++ E
Sbjct: 181 LAVEMKQVAQQEAEKARFVVEKAEQQKLASIISAE 215
>AE014134-3047|AAF53765.1| 276|Drosophila melanogaster CG10691-PB,
isoform B protein.
Length = 276
Score = 328 bits (805), Expect = 8e-90
Identities = 160/215 (74%), Positives = 177/215 (82%)
Frame = +1
Query: 139 MAAQLFNRIXXXXXXXXXXXXXXNSALYNVDGGHRAVIFDRFAGVKQLVVGEGTHFFIPW 318
MAAQ FNRI NSALYNV+GGHRAVIFDRF G+K+ VVGEGTHFFIPW
Sbjct: 1 MAAQFFNRIGQMGLGVAVLGGVVNSALYNVEGGHRAVIFDRFTGIKENVVGEGTHFFIPW 60
Query: 319 VQRPIIFDIRSRPRNVPTITGSKDLQNVNITLRILFRPVPDQLPRIYTILGIDYDERVLP 498
VQRPIIFDIRS+PRNVP ITGSKDLQNVNITLRIL+RP+PDQLP+IYTILG DYDERVLP
Sbjct: 61 VQRPIIFDIRSQPRNVPVITGSKDLQNVNITLRILYRPIPDQLPKIYTILGQDYDERVLP 120
Query: 499 SITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILDDISITHLTFGKEFT 678
SI EVLKAVVAQFDAGELITQRE+VSQ+V+ LT RA QFG ILDDIS+THLTFG+EFT
Sbjct: 121 SIAPEVLKAVVAQFDAGELITQREMVSQRVSQELTVRAKQFGFILDDISLTHLTFGREFT 180
Query: 679 QAVELKQVAQQEAEKARXL*RKLNTKXAALLLQXE 783
AVE+KQVAQQEAEKAR + K + A ++ E
Sbjct: 181 LAVEMKQVAQQEAEKARFVVEKAEQQKLASIISAE 215
>AE014134-3046|AAN11026.1| 276|Drosophila melanogaster CG10691-PA,
isoform A protein.
Length = 276
Score = 328 bits (805), Expect = 8e-90
Identities = 160/215 (74%), Positives = 177/215 (82%)
Frame = +1
Query: 139 MAAQLFNRIXXXXXXXXXXXXXXNSALYNVDGGHRAVIFDRFAGVKQLVVGEGTHFFIPW 318
MAAQ FNRI NSALYNV+GGHRAVIFDRF G+K+ VVGEGTHFFIPW
Sbjct: 1 MAAQFFNRIGQMGLGVAVLGGVVNSALYNVEGGHRAVIFDRFTGIKENVVGEGTHFFIPW 60
Query: 319 VQRPIIFDIRSRPRNVPTITGSKDLQNVNITLRILFRPVPDQLPRIYTILGIDYDERVLP 498
VQRPIIFDIRS+PRNVP ITGSKDLQNVNITLRIL+RP+PDQLP+IYTILG DYDERVLP
Sbjct: 61 VQRPIIFDIRSQPRNVPVITGSKDLQNVNITLRILYRPIPDQLPKIYTILGQDYDERVLP 120
Query: 499 SITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILDDISITHLTFGKEFT 678
SI EVLKAVVAQFDAGELITQRE+VSQ+V+ LT RA QFG ILDDIS+THLTFG+EFT
Sbjct: 121 SIAPEVLKAVVAQFDAGELITQREMVSQRVSQELTVRAKQFGFILDDISLTHLTFGREFT 180
Query: 679 QAVELKQVAQQEAEKARXL*RKLNTKXAALLLQXE 783
AVE+KQVAQQEAEKAR + K + A ++ E
Sbjct: 181 LAVEMKQVAQQEAEKARFVVEKAEQQKLASIISAE 215
>AY061508-1|AAL29056.1| 299|Drosophila melanogaster LD46344p
protein.
Length = 299
Score = 214 bits (523), Expect = 1e-55
Identities = 99/173 (57%), Positives = 132/173 (76%)
Frame = +1
Query: 208 NSALYNVDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTITGSK 387
+ +LY V+GGHRA+IF R G++ + EG H IPW Q PII+DIRSRPR + + TGSK
Sbjct: 39 SQSLYTVEGGHRAIIFSRLGGIQSDIYSEGLHVRIPWFQYPIIYDIRSRPRKISSPTGSK 98
Query: 388 DLQNVNITLRILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQR 567
DLQ +NI+LR+L RP LP ++ LG+DYDE+VLPSI +EVLK+V+A+F+A +LITQR
Sbjct: 99 DLQMINISLRVLSRPDSLNLPYLHKQLGVDYDEKVLPSICNEVLKSVIAKFNASQLITQR 158
Query: 568 EIVSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKA 726
+ VS + L ERA F +ILDD+S+T L+FGKE+T A+E KQVAQQEA++A
Sbjct: 159 QQVSLLIRKELVERARDFNIILDDVSLTELSFGKEYTAAIEAKQVAQQEAQRA 211
>AE013599-2777|AAM68447.1| 243|Drosophila melanogaster CG15081-PC,
isoform C protein.
Length = 243
Score = 214 bits (523), Expect = 1e-55
Identities = 99/173 (57%), Positives = 132/173 (76%)
Frame = +1
Query: 208 NSALYNVDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTITGSK 387
+ +LY V+GGHRA+IF R G++ + EG H IPW Q PII+DIRSRPR + + TGSK
Sbjct: 39 SQSLYTVEGGHRAIIFSRLGGIQSDIYSEGLHVRIPWFQYPIIYDIRSRPRKISSPTGSK 98
Query: 388 DLQNVNITLRILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQR 567
DLQ +NI+LR+L RP LP ++ LG+DYDE+VLPSI +EVLK+V+A+F+A +LITQR
Sbjct: 99 DLQMINISLRVLSRPDSLNLPYLHKQLGVDYDEKVLPSICNEVLKSVIAKFNASQLITQR 158
Query: 568 EIVSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKA 726
+ VS + L ERA F +ILDD+S+T L+FGKE+T A+E KQVAQQEA++A
Sbjct: 159 QQVSLLIRKELVERARDFNIILDDVSLTELSFGKEYTAAIEAKQVAQQEAQRA 211
>AE013599-2776|AAF57631.2| 243|Drosophila melanogaster CG15081-PB,
isoform B protein.
Length = 243
Score = 214 bits (523), Expect = 1e-55
Identities = 99/173 (57%), Positives = 132/173 (76%)
Frame = +1
Query: 208 NSALYNVDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTITGSK 387
+ +LY V+GGHRA+IF R G++ + EG H IPW Q PII+DIRSRPR + + TGSK
Sbjct: 39 SQSLYTVEGGHRAIIFSRLGGIQSDIYSEGLHVRIPWFQYPIIYDIRSRPRKISSPTGSK 98
Query: 388 DLQNVNITLRILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQR 567
DLQ +NI+LR+L RP LP ++ LG+DYDE+VLPSI +EVLK+V+A+F+A +LITQR
Sbjct: 99 DLQMINISLRVLSRPDSLNLPYLHKQLGVDYDEKVLPSICNEVLKSVIAKFNASQLITQR 158
Query: 568 EIVSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKA 726
+ VS + L ERA F +ILDD+S+T L+FGKE+T A+E KQVAQQEA++A
Sbjct: 159 QQVSLLIRKELVERARDFNIILDDVSLTELSFGKEYTAAIEAKQVAQQEAQRA 211
>AE013599-2775|AAF57632.2| 243|Drosophila melanogaster CG15081-PA,
isoform A protein.
Length = 243
Score = 214 bits (523), Expect = 1e-55
Identities = 99/173 (57%), Positives = 132/173 (76%)
Frame = +1
Query: 208 NSALYNVDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTITGSK 387
+ +LY V+GGHRA+IF R G++ + EG H IPW Q PII+DIRSRPR + + TGSK
Sbjct: 39 SQSLYTVEGGHRAIIFSRLGGIQSDIYSEGLHVRIPWFQYPIIYDIRSRPRKISSPTGSK 98
Query: 388 DLQNVNITLRILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQR 567
DLQ +NI+LR+L RP LP ++ LG+DYDE+VLPSI +EVLK+V+A+F+A +LITQR
Sbjct: 99 DLQMINISLRVLSRPDSLNLPYLHKQLGVDYDEKVLPSICNEVLKSVIAKFNASQLITQR 158
Query: 568 EIVSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKA 726
+ VS + L ERA F +ILDD+S+T L+FGKE+T A+E KQVAQQEA++A
Sbjct: 159 QQVSLLIRKELVERARDFNIILDDVSLTELSFGKEYTAAIEAKQVAQQEAQRA 211
>X04228-3|CAA27810.1| 203|Drosophila melanogaster protein (
Drosophila mRNA forCc gene from dopa decarboxylase gene
cluster; mapping2.0 kb from the 5'end of Ddc gene. ).
Length = 203
Score = 175 bits (425), Expect = 8e-44
Identities = 95/159 (59%), Positives = 112/159 (70%), Gaps = 2/159 (1%)
Frame = +1
Query: 343 IRSRPRNVPTITGSKDLQNVNITLRILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLK 522
IRS+PRNVP ITGSKDLQNVNITLRIL+RP+PDQLP+IYTILG DYDERVLPSI
Sbjct: 11 IRSQPRNVPEITGSKDLQNVNITLRILYRPIPDQLPKIYTILGQDYDERVLPSIAP---- 66
Query: 523 AVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQV 702
E+VSQ+V+ LT RA QFG ILDDIS+THLTFG+EFT AVE+KQV
Sbjct: 67 ---------------EMVSQRVSQELTVRAKQFGFILDDISLTHLTFGREFTLAVEMKQV 111
Query: 703 AQQEAEKARXL*RKLNTKXAALLLQXE--TPXCCLSQIL 813
AQQEAEKAR + K + A ++ E C+ Q++
Sbjct: 112 AQQEAEKARFVVEKAEQQKLASIISAEGDAERACVGQVI 150
>X04227-3|CAA27807.1| 203|Drosophila melanogaster URF 3 protein.
Length = 203
Score = 175 bits (425), Expect = 8e-44
Identities = 95/159 (59%), Positives = 112/159 (70%), Gaps = 2/159 (1%)
Frame = +1
Query: 343 IRSRPRNVPTITGSKDLQNVNITLRILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLK 522
IRS+PRNVP ITGSKDLQNVNITLRIL+RP+PDQLP+IYTILG DYDERVLPSI
Sbjct: 11 IRSQPRNVPEITGSKDLQNVNITLRILYRPIPDQLPKIYTILGQDYDERVLPSIAP---- 66
Query: 523 AVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQV 702
E+VSQ+V+ LT RA QFG ILDDIS+THLTFG+EFT AVE+KQV
Sbjct: 67 ---------------EMVSQRVSQELTVRAKQFGFILDDISLTHLTFGREFTLAVEMKQV 111
Query: 703 AQQEAEKARXL*RKLNTKXAALLLQXE--TPXCCLSQIL 813
AQQEAEKAR + K + A ++ E C+ Q++
Sbjct: 112 AQQEAEKARFVVEKAEQQKLASIISAEGDAERACVGQVI 150
>BT021331-1|AAX33479.1| 398|Drosophila melanogaster RE02540p
protein.
Length = 398
Score = 36.7 bits (81), Expect = 0.041
Identities = 39/164 (23%), Positives = 72/164 (43%), Gaps = 1/164 (0%)
Frame = +1
Query: 241 RAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNV-PTITGSKDLQNVNITLR 417
RAVIF ++ G G F +P + D+R+R +V P +KD V++
Sbjct: 99 RAVIFRLGRLMQGGAKGPGIFFILPCIDSYARVDLRTRTYDVPPQEVLTKDSVTVSVDAV 158
Query: 418 ILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDS 597
+ +R V + I + + R+L T L+ + E++++R +S +
Sbjct: 159 VYYR-VSNATVSIANVENAHHSTRLLAQTT---LRNTMGTRHLHEILSERMTISGTMQVQ 214
Query: 598 LTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKAR 729
L E +G+ ++ + I K+ V+L++ EAE AR
Sbjct: 215 LDEATDAWGIKVERVEI------KDVRLPVQLQRAMAAEAEAAR 252
>AY069196-1|AAL39341.1| 397|Drosophila melanogaster GH25458p
protein.
Length = 397
Score = 36.7 bits (81), Expect = 0.041
Identities = 39/164 (23%), Positives = 72/164 (43%), Gaps = 1/164 (0%)
Frame = +1
Query: 241 RAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNV-PTITGSKDLQNVNITLR 417
RAVIF ++ G G F +P + D+R+R +V P +KD V++
Sbjct: 98 RAVIFRLGRLMQGGAKGPGIFFILPCIDSYARVDLRTRTYDVPPQEVLTKDSVTVSVDAV 157
Query: 418 ILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDS 597
+ +R V + I + + R+L T L+ + E++++R +S +
Sbjct: 158 VYYR-VSNATVSIANVENAHHSTRLLAQTT---LRNTMGTRHLHEILSERMTISGTMQVQ 213
Query: 598 LTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKAR 729
L E +G+ ++ + I K+ V+L++ EAE AR
Sbjct: 214 LDEATDAWGIKVERVEI------KDVRLPVQLQRAMAAEAEAAR 251
>AY060624-1|AAL28172.1| 505|Drosophila melanogaster GH04632p
protein.
Length = 505
Score = 36.7 bits (81), Expect = 0.041
Identities = 39/164 (23%), Positives = 72/164 (43%), Gaps = 1/164 (0%)
Frame = +1
Query: 241 RAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNV-PTITGSKDLQNVNITLR 417
RAVIF ++ G G F +P + D+R+R +V P +KD V++
Sbjct: 206 RAVIFRLGRLMQGGAKGPGIFFILPCIDSYARVDLRTRTYDVPPQEVLTKDSVTVSVDAV 265
Query: 418 ILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDS 597
+ +R V + I + + R+L T L+ + E++++R +S +
Sbjct: 266 VYYR-VSNATVSIANVENAHHSTRLLAQTT---LRDTMGTRHLHEILSERMTISGTMQVQ 321
Query: 598 LTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKAR 729
L E +G+ ++ + I K+ V+L++ EAE AR
Sbjct: 322 LDEATDAWGIKVERVEI------KDVRLPVQLQRAMAAEAEAAR 359
>AE014296-877|AAF47920.2| 505|Drosophila melanogaster CG32245-PB,
isoform B protein.
Length = 505
Score = 36.7 bits (81), Expect = 0.041
Identities = 39/164 (23%), Positives = 72/164 (43%), Gaps = 1/164 (0%)
Frame = +1
Query: 241 RAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNV-PTITGSKDLQNVNITLR 417
RAVIF ++ G G F +P + D+R+R +V P +KD V++
Sbjct: 206 RAVIFRLGRLMQGGAKGPGIFFILPCIDSYARVDLRTRTYDVPPQEVLTKDSVTVSVDAV 265
Query: 418 ILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDS 597
+ +R V + I + + R+L T L+ + E++++R +S +
Sbjct: 266 VYYR-VSNATVSIANVENAHHSTRLLAQTT---LRNTMGTRHLHEILSERMTISGTMQVQ 321
Query: 598 LTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKAR 729
L E +G+ ++ + I K+ V+L++ EAE AR
Sbjct: 322 LDEATDAWGIKVERVEI------KDVRLPVQLQRAMAAEAEAAR 359
>AE014296-875|AAF47921.3| 397|Drosophila melanogaster CG32245-PA,
isoform A protein.
Length = 397
Score = 36.7 bits (81), Expect = 0.041
Identities = 39/164 (23%), Positives = 72/164 (43%), Gaps = 1/164 (0%)
Frame = +1
Query: 241 RAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNV-PTITGSKDLQNVNITLR 417
RAVIF ++ G G F +P + D+R+R +V P +KD V++
Sbjct: 98 RAVIFRLGRLMQGGAKGPGIFFILPCIDSYARVDLRTRTYDVPPQEVLTKDSVTVSVDAV 157
Query: 418 ILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDS 597
+ +R V + I + + R+L T L+ + E++++R +S +
Sbjct: 158 VYYR-VSNATVSIANVENAHHSTRLLAQTT---LRNTMGTRHLHEILSERMTISGTMQVQ 213
Query: 598 LTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKAR 729
L E +G+ ++ + I K+ V+L++ EAE AR
Sbjct: 214 LDEATDAWGIKVERVEI------KDVRLPVQLQRAMAAEAEAAR 251
>AE014296-874|AAN11610.2| 398|Drosophila melanogaster CG32245-PC,
isoform C protein.
Length = 398
Score = 36.7 bits (81), Expect = 0.041
Identities = 39/164 (23%), Positives = 72/164 (43%), Gaps = 1/164 (0%)
Frame = +1
Query: 241 RAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNV-PTITGSKDLQNVNITLR 417
RAVIF ++ G G F +P + D+R+R +V P +KD V++
Sbjct: 99 RAVIFRLGRLMQGGAKGPGIFFILPCIDSYARVDLRTRTYDVPPQEVLTKDSVTVSVDAV 158
Query: 418 ILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDS 597
+ +R V + I + + R+L T L+ + E++++R +S +
Sbjct: 159 VYYR-VSNATVSIANVENAHHSTRLLAQTT---LRNTMGTRHLHEILSERMTISGTMQVQ 214
Query: 598 LTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKAR 729
L E +G+ ++ + I K+ V+L++ EAE AR
Sbjct: 215 LDEATDAWGIKVERVEI------KDVRLPVQLQRAMAAEAEAAR 252
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,563,433
Number of Sequences: 53049
Number of extensions: 578712
Number of successful extensions: 1414
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1414
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4126982652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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