Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_C07
(857 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-9|AAK27865.1| 275|Caenorhabditis elegans Mitochondrial... 289 2e-78
U28940-7|AAA68353.2| 294|Caenorhabditis elegans Mitochondrial p... 194 5e-50
U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protei... 43 3e-04
U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protei... 43 3e-04
AC006638-4|AAP82654.1| 312|Caenorhabditis elegans Stomatin prot... 38 0.007
AC006638-3|AAK85483.1| 367|Caenorhabditis elegans Stomatin prot... 38 0.007
Z81072-4|CAB03018.2| 327|Caenorhabditis elegans Hypothetical pr... 36 0.049
AC006638-5|AAP82655.1| 175|Caenorhabditis elegans Stomatin prot... 31 1.1
U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type chlo... 30 2.4
AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type chlo... 30 2.4
AF039052-11|AAF98632.1| 583|Caenorhabditis elegans Hypothetical... 29 4.2
Z67879-2|CAA91788.2| 156|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z69902-6|CAD89723.1| 684|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z69902-5|CAA93762.1| 725|Caenorhabditis elegans Hypothetical pr... 28 7.4
AL132895-2|CAC14404.1| 613|Caenorhabditis elegans Hypothetical ... 28 7.4
U53344-3|AAA96224.1| 702|Caenorhabditis elegans Hypothetical pr... 28 9.8
AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical ... 28 9.8
AF036700-2|AAB88365.1| 550|Caenorhabditis elegans Hypothetical ... 28 9.8
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ... 28 9.8
>AC087079-9|AAK27865.1| 275|Caenorhabditis elegans Mitochondrial
prohibitin complexprotein 1 protein.
Length = 275
Score = 289 bits (709), Expect = 2e-78
Identities = 145/214 (67%), Positives = 165/214 (77%)
Frame = +1
Query: 142 AAQLFNRIXXXXXXXXXXXXXXNSALYNVDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWV 321
A +L R+ +ALYNVDGG RAVIFDRF+GVK VVGEGTHF IPWV
Sbjct: 5 AQKLLGRLGTVGVGLSIAGGIAQTALYNVDGGQRAVIFDRFSGVKNEVVGEGTHFLIPWV 64
Query: 322 QRPIIFDIRSRPRNVPTITGSKDLQNVNITLRILFRPVPDQLPRIYTILGIDYDERVLPS 501
Q+PIIFDIRS PR V TITGSKDLQNVNITLRIL RP PD+LP IY +G+DY ERVLPS
Sbjct: 65 QKPIIFDIRSTPRAVTTITGSKDLQNVNITLRILHRPSPDRLPNIYLNIGLDYAERVLPS 124
Query: 502 ITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQ 681
IT+EVLKAVVAQFDA E+ITQRE+VSQ+ + +L ERAAQFGL+LDDI+ITHL FG+EFT+
Sbjct: 125 ITNEVLKAVVAQFDAHEMITQREVVSQRASVALRERAAQFGLLLDDIAITHLNFGREFTE 184
Query: 682 AVELKQVAQQEAEKARXL*RKLNTKXAALLLQXE 783
AVE+KQVAQQEAEKAR L K A + E
Sbjct: 185 AVEMKQVAQQEAEKARYLVEKAEQMKIAAVTTAE 218
>U28940-7|AAA68353.2| 294|Caenorhabditis elegans Mitochondrial
prohibitin complexprotein 2 protein.
Length = 294
Score = 194 bits (474), Expect = 5e-50
Identities = 95/190 (50%), Positives = 131/190 (68%)
Frame = +1
Query: 214 ALYNVDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTITGSKDL 393
+++ V+ GHRA++F+R G+ + EG HF IPW Q PII+DIR+RP + + TGSKDL
Sbjct: 39 SMFTVEAGHRAIMFNRIGGLSTDLYKEGLHFRIPWFQYPIIYDIRARPNQIRSPTGSKDL 98
Query: 394 QNVNITLRILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREI 573
Q VNI LR+L RP P+ L IY LG +++ERVLPSI +EVLK VVA+F+A +LITQR+
Sbjct: 99 QMVNIGLRVLSRPNPEHLVHIYRTLGQNWEERVLPSICNEVLKGVVAKFNASQLITQRQQ 158
Query: 574 VSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARXL*RKLNT 753
VS V +L ERA F +ILDD+S+T L F +++ AVE KQVA QEA++A +
Sbjct: 159 VSMLVRKTLIERALDFNIILDDVSLTELAFSPQYSAAVEAKQVAAQEAQRATFYVERAKQ 218
Query: 754 KXAALLLQXE 783
+ ++Q E
Sbjct: 219 QKQEKIVQAE 228
>U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protein
1, isoform a protein.
Length = 330
Score = 42.7 bits (96), Expect = 3e-04
Identities = 36/160 (22%), Positives = 73/160 (45%), Gaps = 1/160 (0%)
Frame = +1
Query: 241 RAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPT-ITGSKDLQNVNITLR 417
RAV+F R + V G G F IP + + D+R NVP+ S+D V++
Sbjct: 72 RAVVF-RLGRLVPDVKGPGIFFIIPCIDTFLNIDLRVASYNVPSQEILSRDSVTVSVDAV 130
Query: 418 ILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDS 597
+ F+ V D I +++G+ + L+ ++ E+++ RE +S + S
Sbjct: 131 VYFK-VFDP---ITSVVGVGNATDSTKLLAQTTLRTILGTHTLSEILSDREKISADMKIS 186
Query: 598 LTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEA 717
L E +G+ ++ + + + + +A+ + A ++A
Sbjct: 187 LDEATEPWGIKVERVELRDVRLPSQMQRAMAAEAEATRDA 226
>U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protein
1, isoform b protein.
Length = 325
Score = 42.7 bits (96), Expect = 3e-04
Identities = 36/160 (22%), Positives = 73/160 (45%), Gaps = 1/160 (0%)
Frame = +1
Query: 241 RAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPT-ITGSKDLQNVNITLR 417
RAV+F R + V G G F IP + + D+R NVP+ S+D V++
Sbjct: 72 RAVVF-RLGRLVPDVKGPGIFFIIPCIDTFLNIDLRVASYNVPSQEILSRDSVTVSVDAV 130
Query: 418 ILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDS 597
+ F+ V D I +++G+ + L+ ++ E+++ RE +S + S
Sbjct: 131 VYFK-VFDP---ITSVVGVGNATDSTKLLAQTTLRTILGTHTLSEILSDREKISADMKIS 186
Query: 598 LTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEA 717
L E +G+ ++ + + + + +A+ + A ++A
Sbjct: 187 LDEATEPWGIKVERVELRDVRLPSQMQRAMAAEAEATRDA 226
>AC006638-4|AAP82654.1| 312|Caenorhabditis elegans Stomatin protein
5, isoform b protein.
Length = 312
Score = 38.3 bits (85), Expect = 0.007
Identities = 37/163 (22%), Positives = 71/163 (43%), Gaps = 1/163 (0%)
Frame = +1
Query: 241 RAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNV-PTITGSKDLQNVNITLR 417
RAVIF +K G G F +P + I D+R +V P S+D V++
Sbjct: 142 RAVIFRLGRLIKGGTKGPGLFFVLPCIDTMKIVDLRVLSFDVPPQEILSRDSVTVSVEAV 201
Query: 418 ILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDS 597
I FR V + + + + + R+L T L+ V+ E++++R+ ++
Sbjct: 202 IYFR-VSNPVISVTNVNDAQFSTRLLAQTT---LRNVLGTKTLSEMLSERDAIASISEKV 257
Query: 598 LTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKA 726
L E +G+ ++ + I + + +++ K A + A A
Sbjct: 258 LDEGTDPWGVKVERVEIKDIRLPHQLMRSMAAKAEAVRRARAA 300
>AC006638-3|AAK85483.1| 367|Caenorhabditis elegans Stomatin protein
5, isoform a protein.
Length = 367
Score = 38.3 bits (85), Expect = 0.007
Identities = 37/163 (22%), Positives = 71/163 (43%), Gaps = 1/163 (0%)
Frame = +1
Query: 241 RAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNV-PTITGSKDLQNVNITLR 417
RAVIF +K G G F +P + I D+R +V P S+D V++
Sbjct: 142 RAVIFRLGRLIKGGTKGPGLFFVLPCIDTMKIVDLRVLSFDVPPQEILSRDSVTVSVEAV 201
Query: 418 ILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDS 597
I FR V + + + + + R+L T L+ V+ E++++R+ ++
Sbjct: 202 IYFR-VSNPVISVTNVNDAQFSTRLLAQTT---LRNVLGTKTLSEMLSERDAIASISEKV 257
Query: 598 LTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKA 726
L E +G+ ++ + I + + +++ K A + A A
Sbjct: 258 LDEGTDPWGVKVERVEIKDIRLPHQLMRSMAAKAEAVRRARAA 300
>Z81072-4|CAB03018.2| 327|Caenorhabditis elegans Hypothetical
protein F30A10.5 protein.
Length = 327
Score = 35.5 bits (78), Expect = 0.049
Identities = 24/150 (16%), Positives = 70/150 (46%), Gaps = 2/150 (1%)
Frame = +1
Query: 283 VVGEGTHFFIPWVQR-PIIFDIRSRPRNVPTITGSKDLQNVNITLR-ILFRPVPDQLPRI 456
++ G +F +P + + + ++R +P G+ + NV + L +L+ V D
Sbjct: 58 ILEPGLNFLLPIIDKIKFVQNLREIAIEIPE-QGAITIDNVQLRLDGVLYLRVFDPYKAC 116
Query: 457 YTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILD 636
G+D E + + +++ V + + + +RE++++ + ++ + +A +G+
Sbjct: 117 DASYGVDDPEFAVTQLAQTTMRSEVGKINLDTVFKERELLNENIVFAINKASAPWGIQCM 176
Query: 637 DISITHLTFGKEFTQAVELKQVAQQEAEKA 726
I + + +A++++ A+++ A
Sbjct: 177 RYEIRDMQMPSKIQEAMQMQVEAERKKRAA 206
>AC006638-5|AAP82655.1| 175|Caenorhabditis elegans Stomatin protein
5, isoform c protein.
Length = 175
Score = 31.1 bits (67), Expect = 1.1
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Frame = +1
Query: 241 RAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNV-PTITGSKDLQNVNITLR 417
RAVIF +K G G F +P + I D+R +V P S+D V++
Sbjct: 58 RAVIFRLGRLIKGGTKGPGLFFVLPCIDTMKIVDLRVLSFDVPPQEILSRDSVTVSVEAV 117
Query: 418 ILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVS 579
I FR V + + + + + R+L T L+ V+ E++++R+ ++
Sbjct: 118 IYFR-VSNPVISVTNVNDAQFSTRLLAQTT---LRNVLGTKTLSEMLSERDAIA 167
>U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type
chloride channel protein3, isoform a protein.
Length = 1001
Score = 29.9 bits (64), Expect = 2.4
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Frame = +1
Query: 415 RILFRPVPDQLPRIY---TILGIDYDERVLPSITSEVLKAVVAQFDAGELIT-QREIVSQ 582
R L PV P++ T+ G+ +E +T E +A+ FDA L T +RE+ +
Sbjct: 668 RFLIVPVAKNGPQVAKNETLTGLS-EENARKILTVEEKQAL---FDAASLATPKREMSGK 723
Query: 583 KVNDSLTERAAQFGLILDDISITHLTFGKE 672
+N E G I SITHL+FG++
Sbjct: 724 TINPVHIESHHTIGDIFR--SITHLSFGRQ 751
>AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type
chloride channel CLH-3b protein.
Length = 1001
Score = 29.9 bits (64), Expect = 2.4
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Frame = +1
Query: 415 RILFRPVPDQLPRIY---TILGIDYDERVLPSITSEVLKAVVAQFDAGELIT-QREIVSQ 582
R L PV P++ T+ G+ +E +T E +A+ FDA L T +RE+ +
Sbjct: 668 RFLIVPVAKNGPQVAKNETLTGLS-EENARKILTVEEKQAL---FDAASLATPKREMSGK 723
Query: 583 KVNDSLTERAAQFGLILDDISITHLTFGKE 672
+N E G I SITHL+FG++
Sbjct: 724 TINPVHIESHHTIGDIFR--SITHLSFGRQ 751
>AF039052-11|AAF98632.1| 583|Caenorhabditis elegans Hypothetical
protein T22D1.11 protein.
Length = 583
Score = 29.1 bits (62), Expect = 4.2
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 313 PWVQRPIIFDIRSRPRNVPTITG 381
P +Q ++ D +P+N+PT+TG
Sbjct: 315 PLIQNVLVQDFYEKPKNIPTLTG 337
>Z67879-2|CAA91788.2| 156|Caenorhabditis elegans Hypothetical
protein C05E7.3 protein.
Length = 156
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 226 VDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTI 375
+ GG FDRF K+ + GE I W +R +R+ R++P I
Sbjct: 31 IGGGDDMAHFDRFITHKRAINGELRRSSILWGKRAHASGLRNFERDIPLI 80
>Z69902-6|CAD89723.1| 684|Caenorhabditis elegans Hypothetical
protein C47D12.6b protein.
Length = 684
Score = 28.3 bits (60), Expect = 7.4
Identities = 19/73 (26%), Positives = 34/73 (46%)
Frame = +1
Query: 472 IDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILDDISIT 651
I+Y+E ++ +V KA +AQF+ +I +E + VN + A + + LD +
Sbjct: 606 IEYEENCGDTMNKQVRKAQLAQFNFILVIGAKEKENGTVNVRTRDNAVRGEVALDKLISK 665
Query: 652 HLTFGKEFTQAVE 690
F E+ E
Sbjct: 666 FRRFADEYVADTE 678
>Z69902-5|CAA93762.1| 725|Caenorhabditis elegans Hypothetical
protein C47D12.6a protein.
Length = 725
Score = 28.3 bits (60), Expect = 7.4
Identities = 19/73 (26%), Positives = 34/73 (46%)
Frame = +1
Query: 472 IDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILDDISIT 651
I+Y+E ++ +V KA +AQF+ +I +E + VN + A + + LD +
Sbjct: 647 IEYEENCGDTMNKQVRKAQLAQFNFILVIGAKEKENGTVNVRTRDNAVRGEVALDKLISK 706
Query: 652 HLTFGKEFTQAVE 690
F E+ E
Sbjct: 707 FRRFADEYVADTE 719
>AL132895-2|CAC14404.1| 613|Caenorhabditis elegans Hypothetical
protein Y59A8A.2 protein.
Length = 613
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 520 KAVVAQFDAGELITQREIVS-QKVNDSLTERAAQFGLILDDIS 645
K +V +F A E + ++++ S +K++ LTE GL+L D +
Sbjct: 465 KHLVERFSANEELIEQKLTSIEKLHQLLTELGGDSGLLLSDFN 507
>U53344-3|AAA96224.1| 702|Caenorhabditis elegans Hypothetical
protein T07H6.4 protein.
Length = 702
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -1
Query: 329 GLWTQGMKKCVPSPTTSCLTPANR-SKIT 246
G+W+ + C+P T C P++R SK+T
Sbjct: 366 GVWSSPIPYCIPIQATDCPFPSSRPSKLT 394
>AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical
protein Y116F11B.3 protein.
Length = 1042
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = -1
Query: 374 IVGTFLGRDLMSNIIGLWTQGMKKCVPSPTTSCLTPANRSKITAL*PPSTLYNAE 210
+ G + RDL+ IG+W G V TT+ T +N + PSTLY+ E
Sbjct: 970 VPGLKVARDLVDQNIGVWLGGQ---VNITTTTATTTSNSTSY-----PSTLYSLE 1016
>AF036700-2|AAB88365.1| 550|Caenorhabditis elegans Hypothetical
protein M04G7.2 protein.
Length = 550
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 270 TSKSIEDNSSVTTVDIIQCRIDNTSNQCH 184
TSKS+E+NSS TT D I D + + +
Sbjct: 219 TSKSLEENSSETTNDSISLADDEETREAY 247
>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
protein R52.2 protein.
Length = 1019
Score = 27.9 bits (59), Expect = 9.8
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Frame = +1
Query: 361 NVPTITGSKDLQNVNI-TLRILFRPVPDQLPRIYTI----LGIDYDERVLPSITSEVLK- 522
+VP+I S +N T++ L LPR T+ +G+D+ R+L TS++L
Sbjct: 621 SVPSIVNSITTAKINEETVQDLIHNDNAILPRTTTLPDILIGLDFMSRILGETTSKILPN 680
Query: 523 -AVVAQFDAGELITQREIVSQK 585
+ D G ++T E S K
Sbjct: 681 GTTINYTDVGIIVTGTENQSTK 702
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,068,149
Number of Sequences: 27780
Number of extensions: 314052
Number of successful extensions: 787
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -