Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_C06
         (864 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    45   0.002
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    45   0.003
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.11 
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    36   1.7  

>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 21/49 (42%), Positives = 25/49 (51%)
 Frame = +2

Query: 677 RGEAVCVLGALPXPRSXTRXARSFGCGERFSSLXGGNTVIPXXGXTXGK 823
           R   +C  G +P PRS TR ARSFGCGER+    G    +     T  K
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLTDGDGNFLEDTRKTLSK 74


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 44.8 bits (101), Expect = 0.003
 Identities = 23/40 (57%), Positives = 25/40 (62%)
 Frame = +2

Query: 653 CINESANARGEAVCVLGALPXPRSXTRXARSFGCGERFSS 772
           CI + A AR EAV VL ALP  RS TR  RS GCG   S+
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSA 305


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.5 bits (88), Expect = 0.11
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = -1

Query: 705 APNTQTASPRALADSLMQ 652
           APNTQTASPRALADSLMQ
Sbjct: 331 APNTQTASPRALADSLMQ 348


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 35.5 bits (78), Expect = 1.7
 Identities = 15/19 (78%), Positives = 15/19 (78%)
 Frame = +3

Query: 456 DPDMIXYXDEXGQTTTXMQ 512
           DPDMI Y DE GQTTT MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 600,074,471
Number of Sequences: 1657284
Number of extensions: 9306241
Number of successful extensions: 19211
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19208
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 76652910257
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)