Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_C05
(918 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 34 0.032
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.075
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 1.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 2.1
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 8.6
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 33.9 bits (74), Expect = 0.032
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 496 PPPPGGGGFXXXEKPPPPPP 437
PPPP GF +PPPPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPP 29
Score = 31.1 bits (67), Expect = 0.23
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = -2
Query: 509 PKXXPPXPGGGGFFXXXETPPPPPPXXXYKXAPPPP 402
P PP P GF + PPPPPP K P
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41
Score = 30.3 bits (65), Expect = 0.40
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 454 PPPPPPXXXXIKXPPPPLXP 395
PPPPPP PPPP P
Sbjct: 11 PPPPPPGFEPPSQPPPPPPP 30
Score = 29.5 bits (63), Expect = 0.70
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = -2
Query: 533 LGGXPXXXPKXXPPXPGGGGFFXXXETPPPPPPXXXYK 420
+ P P PP PG F PPPPPP K
Sbjct: 1 MASLPPGNPPPPPPPPG----FEPPSQPPPPPPPGYVK 34
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -3
Query: 454 PPPPPPXXXXIKXPPPPLXP 395
PPPPPP PPP P
Sbjct: 10 PPPPPPPGFEPPSQPPPPPP 29
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.7 bits (71), Expect = 0.075
Identities = 16/34 (47%), Positives = 16/34 (47%)
Frame = -3
Query: 496 PPPPGGGGFXXXEKPPPPPPXXXXIKXPPPPLXP 395
PP P GG PPPPPP PPPP P
Sbjct: 753 PPAPIMGG----PPPPPPPPGVAGAGPPPPPPPP 782
Score = 31.1 bits (67), Expect = 0.23
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 520 LXGXQXXXPPPPGGGGFXXXEKPPPPP 440
+ G PPPPG G PPPPP
Sbjct: 757 IMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 29.1 bits (62), Expect = 0.92
Identities = 20/60 (33%), Positives = 21/60 (35%)
Frame = -1
Query: 564 PPXPPXGPXXXXGXPXXGPKXXXPXPRGGGVFX*XRNPPPPPPXXXI*KXPPPPXNXXXP 385
PP PP P P P P GG PPPPPP + PPP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIP-VPPPAPIMGG-------PPPPPPPPGVAGAGPPPPPPPPP 783
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Frame = +2
Query: 410 GGXFYXXXXGGGG-GGFLXXXKTPPPRGXGXXXLGPXXGXPXXXXGPXGGXGG 565
G F+ GGG GGF PPP G G G G GG GG
Sbjct: 177 GNLFHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFG-GFGGEGHHHGGHGGFGG 228
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 2.1
Identities = 24/84 (28%), Positives = 25/84 (29%), Gaps = 1/84 (1%)
Frame = -1
Query: 618 PPXXXKXFXPPLAGGSXFPPXPPXGPXXXXGXPXXGPKXXXPXPRGGGVFX*XRNPPPPP 439
PP + LA PP PP G P P G G PPPPP
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPPPSRRNRGKP----------PIGNGSSNSSLPPPPPP 342
Query: 438 P-XXXI*KXPPPPXNXXXPRXXGP 370
P P PP P P
Sbjct: 343 PRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/31 (41%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Frame = -3
Query: 493 PPPGGGGFXXXEKPPPPPPXXXXI-KXPPPP 404
PP G G PPPPPP P PP
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355
Score = 26.2 bits (55), Expect = 6.5
Identities = 20/71 (28%), Positives = 21/71 (29%)
Frame = -1
Query: 618 PPXXXKXFXPPLAGGSXFPPXPPXGPXXXXGXPXXGPKXXXPXPRGGGVFX*XRNPPPPP 439
PP PP A S P PP P P P P G+ P P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGM-------PAAP 467
Query: 438 PXXXI*KXPPP 406
P PPP
Sbjct: 468 PLPPAAPAPPP 478
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/58 (27%), Positives = 19/58 (32%)
Frame = -2
Query: 578 GGPXSPPXXPGGXXXLGGXPXXXPKXXPPXPGGGGFFXXXETPPPPPPXXXYKXAPPP 405
G P +PP P + P P PP P G + PP A PP
Sbjct: 1058 GAPSAPPPVPAPSSEIPSIP--APSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPP 1113
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.8 bits (54), Expect = 8.6
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -2
Query: 452 PPPPPPXXXYKXAPP 408
PPPPPP K PP
Sbjct: 1882 PPPPPPMALPKAGPP 1896
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,946,321
Number of Sequences: 5004
Number of extensions: 30143
Number of successful extensions: 298
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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