Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_C04
(885 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 53 1e-05
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 41 0.048
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 40 0.084
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 40 0.11
UniRef50_Q09JM4 Cluster: Cytochrome c oxidase polypeptide VIII; ... 38 0.34
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 38 0.45
UniRef50_Q4TC53 Cluster: Chromosome undetermined SCAF7053, whole... 35 2.4
UniRef50_UPI0000F209A8 Cluster: PREDICTED: hypothetical protein;... 35 3.2
UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1; Lentisp... 34 5.5
UniRef50_Q692Y6 Cluster: Mitochondrial cytochrome c oxidase subu... 34 5.5
UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1; ... 34 5.5
UniRef50_Q9VP19 Cluster: CG7181-PA; n=5; Sophophora|Rep: CG7181-... 33 7.3
UniRef50_UPI0000EBCB6B Cluster: PREDICTED: hypothetical protein;... 33 9.7
UniRef50_UPI0000515C5B Cluster: PREDICTED: hypothetical protein;... 33 9.7
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 52.8 bits (121), Expect = 1e-05
Identities = 28/54 (51%), Positives = 31/54 (57%)
Frame = +3
Query: 675 CINESANARGEAVCVLGALPLPRSLTRCARSFGCAASGISSLKGGNTGYPQKSG 836
CI + A AR EAV VL ALPL RS TRC RS GC + + G G PQ G
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQG 319
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 40.7 bits (91), Expect = 0.048
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +1
Query: 673 SALMNRPTRGERRFAYW 723
+ALMNRPTRGERRFAYW
Sbjct: 25 AALMNRPTRGERRFAYW 41
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 39.9 bits (89), Expect = 0.084
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -3
Query: 745 ERGSGRAPNTQTASPRALADSLMQ 674
+R + APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 39.5 bits (88), Expect = 0.11
Identities = 17/26 (65%), Positives = 19/26 (73%)
Frame = +3
Query: 699 RGEAVCVLGALPLPRSLTRCARSFGC 776
R +C G +PLPRSLTR ARSFGC
Sbjct: 26 RVSRICDTGDIPLPRSLTRYARSFGC 51
>UniRef50_Q09JM4 Cluster: Cytochrome c oxidase polypeptide VIII;
n=2; Ixodoidea|Rep: Cytochrome c oxidase polypeptide
VIII - Argas monolakensis
Length = 69
Score = 37.9 bits (84), Expect = 0.34
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +3
Query: 225 TPPRNKVSRGEMIFLASLMVVGWSAIPAWVLVNIKHYRDK 344
TPPR ++S E + + G AIPAWVLV++ Y+ K
Sbjct: 30 TPPRVRISTAEKVGHLVALTAGILAIPAWVLVHLGDYKKK 69
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 37.5 bits (83), Expect = 0.45
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +1
Query: 487 MIRYIDEFGQTTTRMQ 534
MIRYIDEFGQTTTRMQ
Sbjct: 349 MIRYIDEFGQTTTRMQ 364
>UniRef50_Q4TC53 Cluster: Chromosome undetermined SCAF7053, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF7053,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 176
Score = 35.1 bits (77), Expect = 2.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 228 PPRNKVSRGEMIFLASLMVVGWSAIPAWVLVNIKHYRDK 344
PPRNK+ + F+ S+ V A AW+L ++ YR +
Sbjct: 131 PPRNKIGAAQSFFVMSVFTVVMLAPAAWILHHLPEYRQR 169
>UniRef50_UPI0000F209A8 Cluster: PREDICTED: hypothetical protein;
n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 138
Score = 34.7 bits (76), Expect = 3.2
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 228 PPRNKVSRGEMIFLASLMVVGWSAIPAWVLVNIKHYRDK 344
PP+NK+ G+ + S+ V A W+L +I YR++
Sbjct: 94 PPKNKIGPGQSFLIMSVFAVALLAPAGWILHHIPEYRER 132
>UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1;
Lentisphaera araneosa HTCC2155|Rep: Probable ECF sigma
factor - Lentisphaera araneosa HTCC2155
Length = 201
Score = 33.9 bits (74), Expect = 5.5
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 556 EICDAIALFVTIISCNKQVNNNNCIHFMFQVQGEVWEVFSALMNRPTRGERRFAYW 723
+ DA F+ I N +N+++C + +V +VWE + P RG +F YW
Sbjct: 32 DFSDAYRRFIYIALRNNGLNHHDCEEVVQRVMIKVWEKIARFKYNPGRG--KFRYW 85
>UniRef50_Q692Y6 Cluster: Mitochondrial cytochrome c oxidase subunit
VIII-H; n=1; Branchiostoma belcheri tsingtauense|Rep:
Mitochondrial cytochrome c oxidase subunit VIII-H -
Branchiostoma belcheri tsingtauense
Length = 71
Score = 33.9 bits (74), Expect = 5.5
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 228 PPRNKVSRGEMIFLASLMVVGWSAIPAWVLVNIKHYRDKQ 347
P +N +S + A+ ++ G IP W+L N+K Y+ K+
Sbjct: 32 PAKNPMSSTDKAIGATAILAGVMGIPVWILCNLKRYQGKE 71
>UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1;
Methanocorpusculum labreanum Z|Rep: Putative
uncharacterized protein - Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z)
Length = 109
Score = 33.9 bits (74), Expect = 5.5
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = -1
Query: 636 KMNAIVVVNLFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVSYHVWIQL 472
+MNA V + FIAA + +T + AFF L S G ++VSY VW L
Sbjct: 27 RMNAWVDLAAFIAAV-----ATCVTGYVLWAFFPLGSGRGAMNFLDVSYQVWYDL 76
>UniRef50_Q9VP19 Cluster: CG7181-PA; n=5; Sophophora|Rep: CG7181-PA
- Drosophila melanogaster (Fruit fly)
Length = 68
Score = 33.5 bits (73), Expect = 7.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 228 PPRNKVSRGEMIFLASLMVVGWSAIPAWVLVNIKHYR 338
PP ++S E + L M IPAWVL +I+ Y+
Sbjct: 29 PPTQRISTAEKVILGGGMCAASLFIPAWVLYHIRDYK 65
>UniRef50_UPI0000EBCB6B Cluster: PREDICTED: hypothetical protein;
n=1; Bos taurus|Rep: PREDICTED: hypothetical protein -
Bos taurus
Length = 212
Score = 33.1 bits (72), Expect = 9.7
Identities = 20/46 (43%), Positives = 25/46 (54%)
Frame = -3
Query: 838 SPDFCG*PVLPPLSELIPLAAXPNDRAQRVSERGSGRAPNTQTASP 701
SP+ P LPP L+ L+A P++ A R RG GR P ASP
Sbjct: 134 SPEVTSLPPLPPAPPLV-LSALPSE-ATRERTRGKGRPPPPTPASP 177
>UniRef50_UPI0000515C5B Cluster: PREDICTED: hypothetical protein;
n=1; Apis mellifera|Rep: PREDICTED: hypothetical protein
- Apis mellifera
Length = 70
Score = 33.1 bits (72), Expect = 9.7
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 225 TPPRNKVSRGEMIFLASLMVVGWSAIPAWVLVNIKHY 335
TPPR +VS E + + VG AIP ++ N+K+Y
Sbjct: 29 TPPRVRVSFTEKMLHGVALYVGLMAIPLYIACNVKNY 65
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 742,277,983
Number of Sequences: 1657284
Number of extensions: 13165952
Number of successful extensions: 33456
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 32244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33450
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79522270534
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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