Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_C03
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.03c |gpx1||glutathione peroxidase Gpx1|Schizosaccharom...   117   3e-27
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    27   2.7  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    27   4.7  
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    26   6.2  
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f...    26   8.2  

>SPBC32F12.03c |gpx1||glutathione peroxidase
           Gpx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 158

 Score =  117 bits (281), Expect = 3e-27
 Identities = 61/154 (39%), Positives = 87/154 (56%), Gaps = 1/154 (0%)
 Frame = +2

Query: 179 FTNLPXKNIKGEDVKLDVYKGHVCIIVNVASQCGLTANNYKQLNELYEQYGESKGLRILA 358
           F +L  K+  G        KG V ++VN AS+CG T   YK L  LY++Y + +G  IL 
Sbjct: 4   FYDLAPKDKDGNPFPFSNLKGKVVLVVNTASKCGFTPQ-YKGLEALYQKY-KDRGFIILG 61

Query: 359 FPCNQFAGQEPGNPEEIVCFASERK-VKFDLFEKVDVNGDNASPLWKY*SISKEAPLGSF 535
           FPCNQF  QEPG+ EEI  F  +   V F +  K++VNGDN  P++++    K+      
Sbjct: 62  FPCNQFGNQEPGSDEEIAQFCQKNYGVTFPVLAKINVNGDNVDPVYQFLKSQKKQLGLER 121

Query: 536 IKWNFTKFIINKDGVPVERHGPNTDPLDLVKSLE 637
           IKWNF KF++N+ G  +ER+   + P  L   +E
Sbjct: 122 IKWNFEKFLVNRQGQVIERYSSISKPEHLENDIE 155


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 212 EDVKLDVYKGHVCIIVNVASQCGLTANNYKQLNELYEQYGE 334
           EDV+   YKG + +++NV   C      Y  LNEL+E   E
Sbjct: 493 EDVR-PPYKG-IILMLNVLDSCTNYVGRYTFLNELFEYLQE 531


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -1

Query: 845 KIAKILATXRNVSTFIQ-NYITLXX*YPFNDTHTDFVFRLQFAIKPITKLFFNKRISIFL 669
           ++  I+AT  +++ F + NY         +D HT ++ +  FA +   K FF ++  + +
Sbjct: 103 ELTDIMATVHDLAKFSELNYTAFYKIIKKHDKHTGWILKPVFAARLNAKPFFKEQYDLLV 162


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +3

Query: 36  LKILIDNQF*SDSQTCYAYHRQRNLFIASAIKYSKNDFESGL*SCDIHSRIYRSKTLKV 212
           +K  IDN         Y Y++    +   A+KY KN+    +    +   + R++ LKV
Sbjct: 14  VKTAIDNDNAEQYPDAYKYYQSALDYFMMALKYEKNEKSKEIIRSKVIEYLDRAEKLKV 72


>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
           factor complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -2

Query: 619 IQRVSIGAVAFNRNSILVYDELGKVPLDEAT--QGCLLAYASI 497
           ++R+S  A+   +NSIL    +G+   DEAT    C++ Y  +
Sbjct: 381 LERISTEAMTILQNSILAVSSVGE-DEDEATVVDSCIIGYVFV 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,408,207
Number of Sequences: 5004
Number of extensions: 68665
Number of successful extensions: 169
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)