Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_C03
(884 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0111 - 10129531-10129563,10129645-10129812,10130366-101304... 180 2e-45
04_04_0755 + 27812097-27812144,27812377-27812462,27812976-278130... 179 2e-45
02_05_0224 + 26948263-26948520,26948831-26948907,26949597-269496... 176 2e-44
06_01_0600 + 4332886-4332896,4332968-4333067,4333588-4333664,433... 154 1e-37
03_03_0010 + 13712339-13712392,13712506-13712582,13712715-137127... 154 1e-37
04_04_1636 + 34951841-34954322,34954440-34954627,34955737-349558... 58 1e-08
07_03_0749 + 21212463-21212911,21212976-21213305,21213336-212134... 29 3.8
02_05_0553 - 29918289-29918361,29918505-29918617,29918694-299188... 29 3.8
12_01_0824 + 7601811-7602598,7603690-7605730,7605762-7605767,760... 29 6.6
02_04_0475 + 23229046-23229480,23230062-23231205,23232187-232323... 28 8.7
>11_03_0111 -
10129531-10129563,10129645-10129812,10130366-10130484,
10130589-10130650,10131043-10131119,10131659-10131838
Length = 212
Score = 180 bits (437), Expect = 2e-45
Identities = 87/153 (56%), Positives = 110/153 (71%), Gaps = 1/153 (0%)
Frame = +2
Query: 185 NLPXKNIKGEDVKLDVYKGHVCIIVNVASQCGLTANNYKQLNELYEQYGESKGLRILAFP 364
++ K+IKG DVKL Y+G V +IVNVAS+CGLT +NYK+LN LYE+Y E KGL ILAFP
Sbjct: 56 DISVKDIKGNDVKLSEYEGKVLLIVNVASKCGLTNSNYKELNVLYEKYKE-KGLEILAFP 114
Query: 365 CNQFAGQEPGNPEEIVCFASER-KVKFDLFEKVDVNGDNASPLWKY*SISKEAPLGSFIK 541
CNQFAGQEPG+ EEI R K +F +F+K+DVNG A+PL+K+ K LG IK
Sbjct: 115 CNQFAGQEPGSNEEIEQTVCTRFKAEFPIFDKIDVNGKEAAPLYKFLKSQKGGFLGDGIK 174
Query: 542 WNFTKFIINKDGVPVERHGPNTDPLDLVKSLEK 640
WNFTKF++ KDG VER+ P T PL + ++K
Sbjct: 175 WNFTKFLVGKDGKVVERYAPTTSPLKIENDIQK 207
>04_04_0755 +
27812097-27812144,27812377-27812462,27812976-27813037,
27813256-27813374,27813511-27813678,27813766-27813798
Length = 171
Score = 179 bits (436), Expect = 2e-45
Identities = 84/157 (53%), Positives = 114/157 (72%), Gaps = 1/157 (0%)
Frame = +2
Query: 173 HPFTNLPXKNIKGEDVKLDVYKGHVCIIVNVASQCGLTANNYKQLNELYEQYGESKGLRI 352
H FT ++ G+DV L YKG V +IVNVASQCGLT +NY +L++LYE+Y + +G I
Sbjct: 11 HDFTVKGVQDASGKDVNLSTYKGKVLLIVNVASQCGLTNSNYTELSQLYEKY-KVQGFEI 69
Query: 353 LAFPCNQFAGQEPGNPEEIVCFASER-KVKFDLFEKVDVNGDNASPLWKY*SISKEAPLG 529
LAFPCNQF GQEPG+ EEIV FA R K ++ +F+KVDVNG+NA+PL+KY +K G
Sbjct: 70 LAFPCNQFGGQEPGSNEEIVQFACTRFKAEYPIFDKVDVNGNNAAPLYKYLKSNKGGLFG 129
Query: 530 SFIKWNFTKFIINKDGVPVERHGPNTDPLDLVKSLEK 640
IKWNF+KF+++K+G V+R+ P T PL + K ++K
Sbjct: 130 DSIKWNFSKFLVDKEGRVVDRYAPTTSPLSIEKDIKK 166
>02_05_0224 +
26948263-26948520,26948831-26948907,26949597-26949658,
26949797-26949915,26950326-26950493,26950587-26950619
Length = 238
Score = 176 bits (428), Expect = 2e-44
Identities = 84/157 (53%), Positives = 112/157 (71%), Gaps = 1/157 (0%)
Frame = +2
Query: 173 HPFTNLPXKNIKGEDVKLDVYKGHVCIIVNVASQCGLTANNYKQLNELYEQYGESKGLRI 352
H FT K+ G+DV L +KG V +IVNVASQCGLT +NY +L++LYE+Y + +G I
Sbjct: 81 HDFT---VKDASGKDVDLSTFKGKVLLIVNVASQCGLTNSNYTELSQLYEKY-KDQGFEI 136
Query: 353 LAFPCNQFAGQEPGNPEEIVCFASER-KVKFDLFEKVDVNGDNASPLWKY*SISKEAPLG 529
LAFPCNQF GQEPG EEIV FA R K ++ +F+KVDVNGDN +P++K+ SK G
Sbjct: 137 LAFPCNQFGGQEPGTNEEIVQFACTRFKAEYPIFDKVDVNGDNTAPIYKFLKSSKGGLFG 196
Query: 530 SFIKWNFTKFIINKDGVPVERHGPNTDPLDLVKSLEK 640
IKWNF+KF+++K+G VER+ P T PL + K ++K
Sbjct: 197 DNIKWNFSKFLVDKEGRVVERYAPTTSPLSMEKDIKK 233
>06_01_0600 +
4332886-4332896,4332968-4333067,4333588-4333664,
4333774-4333835,4334016-4334134,4334237-4334404,
4335004-4335123
Length = 218
Score = 154 bits (373), Expect = 1e-37
Identities = 72/143 (50%), Positives = 98/143 (68%), Gaps = 1/143 (0%)
Frame = +2
Query: 197 KNIKGEDVKLDVYKGHVCIIVNVASQCGLTANNYKQLNELYEQYGESKGLRILAFPCNQF 376
++I G+DV L +KG +IVNVASQCGLT NY +L+ LYE+Y +++G ILAFPCNQF
Sbjct: 37 QDIDGKDVALSKFKGRALLIVNVASQCGLTTANYTELSHLYEKY-KTQGFEILAFPCNQF 95
Query: 377 AGQEPGNPEEIVCFASER-KVKFDLFEKVDVNGDNASPLWKY*SISKEAPLGSFIKWNFT 553
QEPG+ +I FA R K +F +F+KVDVNG N +P++K+ S LG +KWNF
Sbjct: 96 GAQEPGSNPQIKQFACTRFKAEFPIFDKVDVNGPNTAPIYKFLKSSAGGFLGDLVKWNFE 155
Query: 554 KFIINKDGVPVERHGPNTDPLDL 622
KF+++K G VER+ P T P +
Sbjct: 156 KFLVDKTGKVVERYPPTTSPFQI 178
>03_03_0010 +
13712339-13712392,13712506-13712582,13712715-13712776,
13713231-13713349,13714928-13715095,13715183-13715212
Length = 169
Score = 154 bits (373), Expect = 1e-37
Identities = 79/160 (49%), Positives = 109/160 (68%), Gaps = 5/160 (3%)
Frame = +2
Query: 173 HPFTNLPXKNIKGEDVKLDVYKGHVCIIVNVASQCGLTANNYKQLNELYEQYGESKGLRI 352
H FT K+ G++V L++YKG V I+VNVAS+CG T NY QL ELY+++ + K I
Sbjct: 13 HEFT---VKDCNGKEVSLEMYKGKVLIVVNVASKCGFTETNYTQLTELYQKHRD-KDFEI 68
Query: 353 LAFPCNQFAGQEPGNPEEIVCFASER-KVKFDLFEKVDVNGDNASPLWKY*SISKEAPLG 529
LAFPCNQF QEPG+ ++I FA R K ++ +F+KV VNG +A+PL+K+ SK G
Sbjct: 69 LAFPCNQFLRQEPGSDQQIKDFACTRFKAEYPVFQKVRVNGPDAAPLYKFLKASKPGLFG 128
Query: 530 SFIKWNFTKFIINKDGVPVERHGPNTDPL----DLVKSLE 637
S IKWNFTKF+I+K+G + R+ T PL D++K+LE
Sbjct: 129 SRIKWNFTKFLIDKNGKVINRYSTATSPLSFEKDILKALE 168
>04_04_1636 + 34951841-34954322,34954440-34954627,34955737-34955838,
34956101-34956177,34956258-34956319,34956504-34956511
Length = 972
Score = 57.6 bits (133), Expect = 1e-08
Identities = 28/55 (50%), Positives = 37/55 (67%)
Frame = +2
Query: 173 HPFTNLPXKNIKGEDVKLDVYKGHVCIIVNVASQCGLTANNYKQLNELYEQYGES 337
H FT K+ +G DV+L YKG V +IVN AS+CGLT NY +L +LY +Y E+
Sbjct: 919 HEFT---VKDARGSDVELSRYKGKVVLIVNAASRCGLTNYNYTELGQLYGKYKET 970
>07_03_0749 +
21212463-21212911,21212976-21213305,21213336-21213436,
21213758-21213883,21213962-21214083,21214177-21214450,
21214767-21215004,21215101-21215248,21215400-21215732
Length = 706
Score = 29.5 bits (63), Expect = 3.8
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = -3
Query: 558 NLVKFHLMKLPKGASLLMLQYFHSGLALSPLTSTFSNKSNL----TLRSEAKQTISSG 397
NLV+ H L +G +LL+ +Y +G + L F++ SN+ TL E + I+ G
Sbjct: 415 NLVRLHGFCLHQGETLLVYEYIKNGSLDNFLFGNFTSHSNISYFFTLLEEIPKDINRG 472
>02_05_0553 -
29918289-29918361,29918505-29918617,29918694-29918801,
29918991-29919206,29919284-29919559,29919720-29919824,
29919925-29920379,29920746-29920940,29921237-29921639,
29922006-29922518
Length = 818
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -1
Query: 143 ILTVLNCARDKQITLPMIGVASLAITLKLIVNQN 42
+L + +D +I LP++G LAI + +VNQ+
Sbjct: 540 VLLLFELTKDYRILLPLMGAVGLAIWVPSVVNQS 573
>12_01_0824 +
7601811-7602598,7603690-7605730,7605762-7605767,
7606142-7606291
Length = 994
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 411 FALPLSVKSNLICLRKLMSMETMPVHCGSIEA*ARRHPWV 530
F LP+S N+ L +L S+ M +HCG + + W+
Sbjct: 680 FNLPVSSLENIDALGELTSLADMSLHCGKQDTKSTTPGWM 719
>02_04_0475 +
23229046-23229480,23230062-23231205,23232187-23232334,
23232776-23234225
Length = 1058
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -2
Query: 625 DQIQR-VSIGAVAFNRNSILVYDELGKVPLDEATQGCLLAYASILPQWTGI 476
D IQ+ +S+G + N + +++G+ + E L Y+S++P +TG+
Sbjct: 481 DLIQQWISLGFIQERPNKHISLEKIGEQYVSELLGMSFLQYSSLVPDYTGL 531
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,636,983
Number of Sequences: 37544
Number of extensions: 397674
Number of successful extensions: 929
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -