Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_C02
         (1022 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P03093 Cluster: Capsid protein VP2; n=217; Polyomavirus...    44   0.006
UniRef50_P24596 Cluster: Capsid protein VP2; n=4; Murine pneumot...    41   0.059
UniRef50_P24849 Cluster: Capsid protein VP2; n=2; Bovine polyoma...    41   0.059
UniRef50_Q80FI5 Cluster: Putative uncharacterized protein; n=2; ...    39   0.24 
UniRef50_Q20HY5 Cluster: Putative VP2; n=2; Crow polyomavirus|Re...    36   2.2  
UniRef50_Q20HX9 Cluster: Putative VP2; n=2; Finch polyomavirus|R...    36   2.2  
UniRef50_P03098 Cluster: Capsid protein VP2; n=5; Hamster polyom...    35   2.9  

>UniRef50_P03093 Cluster: Capsid protein VP2; n=217;
           Polyomavirus|Rep: Capsid protein VP2 - Simian virus 40
           (SV40)
          Length = 352

 Score = 44.0 bits (99), Expect = 0.006
 Identities = 20/26 (76%), Positives = 21/26 (80%)
 Frame = +2

Query: 218 FISGPGSGGGANQRTAPQWMLPLLLG 295
           FI    + GGANQRTAPQWMLPLLLG
Sbjct: 276 FIEKFEAPGGANQRTAPQWMLPLLLG 301


>UniRef50_P24596 Cluster: Capsid protein VP2; n=4; Murine
           pneumotropic virus|Rep: Capsid protein VP2 - Murine
           polyomavirus (strain Kilham) (MPyV)
          Length = 341

 Score = 40.7 bits (91), Expect = 0.059
 Identities = 19/33 (57%), Positives = 24/33 (72%)
 Frame = +2

Query: 197 VSLVFLSFISGPGSGGGANQRTAPQWMLPLLLG 295
           VS  +++ +  PG   GANQR+AP WMLPLLLG
Sbjct: 260 VSATYVTKVDPPG---GANQRSAPDWMLPLLLG 289


>UniRef50_P24849 Cluster: Capsid protein VP2; n=2; Bovine
           polyomavirus|Rep: Capsid protein VP2 - Bovine
           polyomavirus (BPyV)
          Length = 353

 Score = 40.7 bits (91), Expect = 0.059
 Identities = 19/40 (47%), Positives = 24/40 (60%)
 Frame = +2

Query: 176 EKPES*LVSLVFLSFISGPGSGGGANQRTAPQWMLPLLLG 295
           EK E  +   V   ++   G+ GGA QR AP W+LPLLLG
Sbjct: 251 EKGEEGMKHPVSAEYVEKYGAPGGAEQRVAPDWLLPLLLG 290


>UniRef50_Q80FI5 Cluster: Putative uncharacterized protein; n=2;
           Goose hemorrhagic polyomavirus|Rep: Putative
           uncharacterized protein - Goose hemorrhagic polyomavirus
          Length = 326

 Score = 38.7 bits (86), Expect = 0.24
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = +2

Query: 242 GGANQRTAPQWMLPLLLG 295
           GGANQR AP WMLPL+LG
Sbjct: 257 GGANQRAAPDWMLPLILG 274


>UniRef50_Q20HY5 Cluster: Putative VP2; n=2; Crow polyomavirus|Rep:
           Putative VP2 - Crow polyomavirus
          Length = 333

 Score = 35.5 bits (78), Expect = 2.2
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = +2

Query: 242 GGANQRTAPQWMLPLLLG 295
           GGA+QR+ P WMLPL+LG
Sbjct: 263 GGAHQRSCPDWMLPLILG 280


>UniRef50_Q20HX9 Cluster: Putative VP2; n=2; Finch polyomavirus|Rep:
           Putative VP2 - Finch polyomavirus
          Length = 354

 Score = 35.5 bits (78), Expect = 2.2
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +2

Query: 242 GGANQRTAPQWMLPLLLG 295
           GGA+QR AP W+LPLLLG
Sbjct: 286 GGAHQRHAPDWLLPLLLG 303


>UniRef50_P03098 Cluster: Capsid protein VP2; n=5; Hamster
           polyomavirus|Rep: Capsid protein VP2 - Hamster
           polyomavirus (HaPyV)
          Length = 345

 Score = 35.1 bits (77), Expect = 2.9
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +2

Query: 242 GGANQRTAPQWMLPLLLG 295
           GGA+QR  P WMLPL+LG
Sbjct: 300 GGAHQRVTPDWMLPLILG 317


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 654,658,184
Number of Sequences: 1657284
Number of extensions: 11048566
Number of successful extensions: 25502
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 24718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25495
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 97572067153
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)