Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_C02
         (1022 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    27   3.2  
SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...    27   3.2  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    27   5.6  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    26   7.4  

>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 21/97 (21%), Positives = 34/97 (35%)
 Frame = -1

Query: 356 VDSYRALQQAAGRSPAARRLGLEVKATSTEEQFFDLHHHRIRDLK*KTKRLNLPVNFLVF 177
           +D  +AL    G      R    +  T           H++ D      ++  P   +VF
Sbjct: 3   MDIGKALSDVGGLRDITSRANNSLPPTPDSSPAAPSKKHKLYDFLESRGKIETPRKRIVF 62

Query: 176 QFLEELFCKSPRRVQKKPPQSTSGIAQXPSAGHPSHP 66
           +  ++     P  +QKKP Q    +      G  SHP
Sbjct: 63  E--KKPLLHKPVHIQKKPAQLCKELLIRQLGGSRSHP 97


>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +1

Query: 127 FFWT---RLGLLQNSSSRN*KTRKLTGKFSLFVFYF 225
           + WT    +G+LQNS+  N   +KL   + LF+FYF
Sbjct: 185 YAWTLFAAMGVLQNSNLSN---KKLLAVYPLFLFYF 217


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 248 ANQRTAPQWMLPLLLGRVFLQRASGRLPVAV-RGTNQHTR 364
           A+ R  P  MLP +LG+ F Q++   +PV + +GT +  +
Sbjct: 142 ADDRVIP--MLPRILGKTFYQKSKVPVPVKISKGTAEQLK 179


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 254 DLHHHRIRDLK*KTKRLNLPVNFLVFQF 171
           +L+    RDL  KTKRL  P N L+ QF
Sbjct: 119 ELNFVAARDLLIKTKRLPKPFNNLLIQF 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,046
Number of Sequences: 5004
Number of extensions: 40300
Number of successful extensions: 76
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 533248662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)